Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001486A_C01 KMC001486A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO29946.1| expressed protein [Arabidopsis thaliana] 96 2e-19
ref|NP_566159.1| expressed protein; protein id: At3g02040.1, sup... 96 2e-19
ref|NP_198924.1| putative protein; protein id: At5g41080.1 [Arab... 86 3e-16
emb|CAD40553.1| OSJNBa0072K14.9 [Oryza sativa (japonica cultivar... 71 7e-12
ref|NP_199144.1| putative protein; protein id: At5g43300.1 [Arab... 60 2e-08
>gb|AAO29946.1| expressed protein [Arabidopsis thaliana]
Length = 361
Score = 96.3 bits (238), Expect = 2e-19
Identities = 52/89 (58%), Positives = 65/89 (72%)
Frame = -1
Query: 523 QLCLLTYGKLNNVPEAVHMQHMMGIDGVIVDFVQEITEAVGDMVKPAKGGDDEEGLTEGI 344
+L L+TYGKLNNV EAV+MQH+MGI+GVIVD V+EITEAV +M+KP+ D +G
Sbjct: 284 KLSLMTYGKLNNVAEAVYMQHLMGIEGVIVDHVEEITEAVREMMKPS--NRDADG----- 336
Query: 343 GKVQVNNTKPKFSQQELSFILKLIPQLIQ 257
KP FS +ELSF+LKLIP+LIQ
Sbjct: 337 -----TKPKPNFSDRELSFLLKLIPELIQ 360
>ref|NP_566159.1| expressed protein; protein id: At3g02040.1, supported by cDNA:
40090., supported by cDNA: gi_18175908, supported by
cDNA: gi_21280828 [Arabidopsis thaliana]
gi|6513927|gb|AAF14831.1|AC011664_13 hypothetical
protein [Arabidopsis thaliana]
gi|18175909|gb|AAL59949.1| unknown protein [Arabidopsis
thaliana] gi|21280829|gb|AAM45121.1| unknown protein
[Arabidopsis thaliana]
Length = 361
Score = 96.3 bits (238), Expect = 2e-19
Identities = 52/89 (58%), Positives = 65/89 (72%)
Frame = -1
Query: 523 QLCLLTYGKLNNVPEAVHMQHMMGIDGVIVDFVQEITEAVGDMVKPAKGGDDEEGLTEGI 344
+L L+TYGKLNNV EAV+MQH+MGI+GVIVD V+EITEAV +M+KP+ D +G
Sbjct: 284 KLSLMTYGKLNNVAEAVYMQHLMGIEGVIVDHVEEITEAVREMMKPS--NRDADG----- 336
Query: 343 GKVQVNNTKPKFSQQELSFILKLIPQLIQ 257
KP FS +ELSF+LKLIP+LIQ
Sbjct: 337 -----TKPKPNFSDRELSFLLKLIPELIQ 360
>ref|NP_198924.1| putative protein; protein id: At5g41080.1 [Arabidopsis thaliana]
gi|9759154|dbj|BAB09710.1| contains similarity to
unknown protein~gb|AAF14831.1~gene_id:MEE6.15
[Arabidopsis thaliana] gi|26449849|dbj|BAC42047.1|
unknown protein [Arabidopsis thaliana]
Length = 374
Score = 85.5 bits (210), Expect = 3e-16
Identities = 49/97 (50%), Positives = 64/97 (65%), Gaps = 9/97 (9%)
Frame = -1
Query: 520 LCLLTYGKLNNVPEAVHMQHMMGIDGVIVDFVQEITEAVGDMV---------KPAKGGDD 368
L LLTYGKLNNV EAV+MQ++MGIDGVIVDFV+EI E+ M+ P+ DD
Sbjct: 288 LSLLTYGKLNNVGEAVYMQYVMGIDGVIVDFVEEIIESTTRMMIRPPPSSSPLPSPSKDD 347
Query: 367 EEGLTEGIGKVQVNNTKPKFSQQELSFILKLIPQLIQ 257
+ + T+P+FSQ+E+SF+LKL+ QLIQ
Sbjct: 348 DVAI-----------TRPEFSQKEISFLLKLLSQLIQ 373
>emb|CAD40553.1| OSJNBa0072K14.9 [Oryza sativa (japonica cultivar-group)]
Length = 396
Score = 71.2 bits (173), Expect = 7e-12
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 14/102 (13%)
Frame = -1
Query: 520 LCLLTYGKLNNVPEAVHMQHMMGIDGVIVDFVQEITEAVGDMVK------PAKGGDDEEG 359
L LLTYG+LNNVP+AV++Q +MG+DGVIVD V EI AV + P D
Sbjct: 295 LSLLTYGQLNNVPKAVYLQQLMGVDGVIVDLVAEIAAAVSEFAAAAAAAVPVPERDSSSS 354
Query: 358 LTEGIGKV-------QVNNTKPKFSQQE-LSFILKLIPQLIQ 257
+G G V T FS++E +SF+L+L P+L+Q
Sbjct: 355 YMDGGGDVGLLEMTSPAARTTASFSRREDVSFLLRLTPELVQ 396
>ref|NP_199144.1| putative protein; protein id: At5g43300.1 [Arabidopsis thaliana]
gi|10177392|dbj|BAB10593.1|
gb|AAF14831.1~gene_id:MNL12.12~similar to unknown
protein [Arabidopsis thaliana]
Length = 281
Score = 60.1 bits (144), Expect = 2e-08
Identities = 31/90 (34%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Frame = -1
Query: 523 QLCLLTYGKLNNVPEAVHMQHMMGIDGVIVDFVQEITEAVGDMVKPAKGGDDEEGLTEGI 344
+L LL+YG+LNNV E +++Q++MG++GVIVD V++I+EA+ ++ DD EG E
Sbjct: 194 KLSLLSYGQLNNVVEVIYLQYLMGVEGVIVDMVKDISEAIANI--EVTNEDDCEGEDERK 251
Query: 343 GKVQVNNTKPK--FSQQELSFILKLIPQLI 260
++ + K ++ ++ + K +P+L+
Sbjct: 252 CLIRFGEERKKVEITKDMITLLNKFVPKLL 281
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,406,844
Number of Sequences: 1393205
Number of extensions: 11209994
Number of successful extensions: 36269
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 33071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36118
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
