Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001484A_C02 KMC001484A_c02
(1292 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplast ... 201 1e-54
pir||S20941 protochlorophyllide reductase (EC 1.3.1.33) precurso... 199 2e-54
sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplast pre... 199 2e-54
ref|NP_200230.1| NADPH:protochlorophyllide oxidoreductase A (gb|... 200 3e-54
gb|AAC49043.1| NADPH:protochlorophyllide oxidoreductase A gi|158... 200 3e-54
>sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplast precursor (PCR)
(NADPH-protochlorophyllide oxidoreductase) (POR)
gi|1084321|pir||JC4146 protochlorophyllide reductase (EC
1.3.1.33) precursor - cucumber gi|2244614|dbj|BAA21089.1|
NADPH-protochlorophyllide oxidoreductase [Cucumis
sativus]
Length = 398
Score = 201 bits (512), Expect(2) = 1e-54
Identities = 96/100 (96%), Positives = 98/100 (98%)
Frame = -3
Query: 1290 MLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITQGYVSEDE 1111
MLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFR LFPPFQK+ITQGYVSEDE
Sbjct: 281 MLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDE 340
Query: 1110 AGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASD 991
AGKRLAQVVS+PSLTKSGVYWSWNK SASFENQLSQEASD
Sbjct: 341 AGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASD 380
Score = 35.8 bits (81), Expect(2) = 1e-54
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -1
Query: 986 EKARKVWEVSEKLVGLA 936
EKARKVWE+SEKLVGLA
Sbjct: 382 EKARKVWELSEKLVGLA 398
>pir||S20941 protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea
Length = 400
Score = 199 bits (507), Expect(2) = 2e-54
Identities = 94/100 (94%), Positives = 98/100 (98%)
Frame = -3
Query: 1290 MLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITQGYVSEDE 1111
MLTMQEFH+RYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYIT+GYVSE+E
Sbjct: 283 MLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEE 342
Query: 1110 AGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASD 991
+GKRLAQVVSDPSLTKSGVYWSWN SASFENQLSQEASD
Sbjct: 343 SGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASD 382
Score = 37.0 bits (84), Expect(2) = 2e-54
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1
Query: 986 EKARKVWEVSEKLVGLA 936
EKARKVWEVSEKLVGLA
Sbjct: 384 EKARKVWEVSEKLVGLA 400
>sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplast precursor (PCR)
(NADPH-protochlorophyllide oxidoreductase) (POR)
gi|20830|emb|CAA44786.1| protochlorophyllide reductase
[Pisum sativum]
Length = 399
Score = 199 bits (507), Expect(2) = 2e-54
Identities = 94/100 (94%), Positives = 98/100 (98%)
Frame = -3
Query: 1290 MLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITQGYVSEDE 1111
MLTMQEFH+RYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYIT+GYVSE+E
Sbjct: 282 MLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEE 341
Query: 1110 AGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASD 991
+GKRLAQVVSDPSLTKSGVYWSWN SASFENQLSQEASD
Sbjct: 342 SGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASD 381
Score = 37.0 bits (84), Expect(2) = 2e-54
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1
Query: 986 EKARKVWEVSEKLVGLA 936
EKARKVWEVSEKLVGLA
Sbjct: 383 EKARKVWEVSEKLVGLA 399
>ref|NP_200230.1| NADPH:protochlorophyllide oxidoreductase A (gb|AAC49043.1); protein
id: At5g54190.1, supported by cDNA: gi_968974
[Arabidopsis thaliana] gi|26454645|sp|Q42536|PORA_ARATH
Protochlorophyllide reductase A, chloroplast precursor
(PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR
A) gi|10178168|dbj|BAB11581.1| NADPH:protochlorophyllide
oxidoreductase A [Arabidopsis thaliana]
gi|28392935|gb|AAO41903.1| putative
NADPH:protochlorophyllide oxidoreductase A [Arabidopsis
thaliana] gi|28827538|gb|AAO50613.1| putative
NADPH:protochlorophyllide oxidoreductase A [Arabidopsis
thaliana]
Length = 405
Score = 200 bits (508), Expect(2) = 3e-54
Identities = 94/100 (94%), Positives = 99/100 (99%)
Frame = -3
Query: 1290 MLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITQGYVSEDE 1111
MLTMQEFH+R+HE+TGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYIT+GYVSE E
Sbjct: 288 MLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESE 347
Query: 1110 AGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASD 991
AGKRLAQVV+DPSLTKSGVYWSWNKTSASFENQLSQEASD
Sbjct: 348 AGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASD 387
Score = 35.8 bits (81), Expect(2) = 3e-54
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -1
Query: 986 EKARKVWEVSEKLVGLA 936
EKAR+VWEVSEKLVGLA
Sbjct: 389 EKARRVWEVSEKLVGLA 405
>gb|AAC49043.1| NADPH:protochlorophyllide oxidoreductase A gi|1583455|prf||2120441A
protochlorophyllide oxidoreductase
Length = 405
Score = 200 bits (508), Expect(2) = 3e-54
Identities = 94/100 (94%), Positives = 99/100 (99%)
Frame = -3
Query: 1290 MLTMQEFHKRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITQGYVSEDE 1111
MLTMQEFH+R+HE+TGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYIT+GYVSE E
Sbjct: 288 MLTMQEFHRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESE 347
Query: 1110 AGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASD 991
AGKRLAQVV+DPSLTKSGVYWSWNKTSASFENQLSQEASD
Sbjct: 348 AGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASD 387
Score = 35.8 bits (81), Expect(2) = 3e-54
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -1
Query: 986 EKARKVWEVSEKLVGLA 936
EKAR+VWEVSEKLVGLA
Sbjct: 389 EKARRVWEVSEKLVGLA 405
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,141,615,640
Number of Sequences: 1393205
Number of extensions: 25780504
Number of successful extensions: 61034
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 56902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60969
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 83036206768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
