Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001481A_C01 KMC001481A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S51839 D13F(MYBST1) protein - potato 107 1e-22
gb|AAB32591.2| MybSt1 [Solanum tuberosum] 107 1e-22
ref|NP_199550.1| Myb-related transcription activator-like; prote... 99 5e-20
gb|AAN63154.1| transcription factor MYBS3 [Oryza sativa (japonic... 78 7e-14
emb|CAD44622.1| MYB30 protein [Oryza sativa (japonica cultivar-g... 78 1e-13
>pir||S51839 D13F(MYBST1) protein - potato
Length = 342
Score = 107 bits (267), Expect = 1e-22
Identities = 65/99 (65%), Positives = 73/99 (73%), Gaps = 5/99 (5%)
Frame = -2
Query: 589 YPLPY--WSGYSPAEPPKKEETHEVVKPTAVLSKSPIHVDELVGMSKLSLGDSIGDSG-P 419
YP+PY W GY+ P ETHEV+KP AV SKSPI+VDELVGMSKLSLG+SIGD+ P
Sbjct: 247 YPMPYPCWPGYTAE--PAIAETHEVLKPIAVHSKSPINVDELVGMSKLSLGESIGDAAKP 304
Query: 418 SSLSRKLVEEGPSRPSAFHATPACGSSNINGS--VIHAV 308
SLS KLV EG SR SAFHA P+ GSS +N S IHAV
Sbjct: 305 PSLSLKLV-EGSSRQSAFHANPSSGSSGMNSSHNPIHAV 342
>gb|AAB32591.2| MybSt1 [Solanum tuberosum]
Length = 342
Score = 107 bits (267), Expect = 1e-22
Identities = 65/99 (65%), Positives = 73/99 (73%), Gaps = 5/99 (5%)
Frame = -2
Query: 589 YPLPY--WSGYSPAEPPKKEETHEVVKPTAVLSKSPIHVDELVGMSKLSLGDSIGDSG-P 419
YP+PY W GY+ P ETHEV+KP AV SKSPI+VDELVGMSKLSLG+SIGD+ P
Sbjct: 247 YPMPYPCWPGYTAE--PAIAETHEVLKPIAVHSKSPINVDELVGMSKLSLGESIGDAAKP 304
Query: 418 SSLSRKLVEEGPSRPSAFHATPACGSSNINGS--VIHAV 308
SLS KLV EG SR SAFHA P+ GSS +N S IHAV
Sbjct: 305 PSLSLKLV-EGSSRQSAFHANPSSGSSGMNSSHNPIHAV 342
>ref|NP_199550.1| Myb-related transcription activator-like; protein id: At5g47390.1,
supported by cDNA: 102806., supported by cDNA:
gi_18175631, supported by cDNA: gi_20465652 [Arabidopsis
thaliana] gi|8809622|dbj|BAA97173.1| Myb-related
transcription activator-like [Arabidopsis thaliana]
gi|18175632|gb|AAL59900.1| putative Myb-related
transcription activator protein [Arabidopsis thaliana]
gi|20465653|gb|AAM20295.1| putative Myb-related
transcription activator [Arabidopsis thaliana]
gi|21536554|gb|AAM60886.1| Myb-related transcription
activator-like [Arabidopsis thaliana]
Length = 365
Score = 98.6 bits (244), Expect = 5e-20
Identities = 59/98 (60%), Positives = 72/98 (73%), Gaps = 3/98 (3%)
Frame = -2
Query: 592 PYPLPYW-SGYSPAEPPKKEETHEVVKPTAVLSKSPIHVDELVGMSKLSLGDS--IGDSG 422
P+P P W +GY P EPPKKEETHE+++PTAV SK+PI+VDEL+GMSKLSL +S G+S
Sbjct: 271 PFPFPIWPAGYVP-EPPKKEETHEILRPTAVHSKAPINVDELLGMSKLSLAESNKHGES- 328
Query: 421 PSSLSRKLVEEGPSRPSAFHATPACGSSNINGSVIHAV 308
SLS KL SR SAFH P+ SS+I SVIHA+
Sbjct: 329 DQSLSLKLGGGSSSRQSAFHPNPSSDSSDIK-SVIHAL 365
>gb|AAN63154.1| transcription factor MYBS3 [Oryza sativa (japonica cultivar-group)]
Length = 318
Score = 78.2 bits (191), Expect = 7e-14
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = -2
Query: 589 YPLPYWSGYSPAEPPKKEETHEVVKPTAVLSKSPIHVDELVGMSKLSLGDSIGDSGPSSL 410
+ +P+W + P +ETHE+VKP V SKSPI+VDELVGMSKLS+G+S ++ +SL
Sbjct: 236 FSVPFWQNQKDEDGPV-QETHEIVKPVPVHSKSPINVDELVGMSKLSIGESNQETESTSL 294
Query: 409 SRKLVEEGPSRPSAFHATP 353
S LV G +R SAFHA P
Sbjct: 295 SLNLV-GGQNRQSAFHANP 312
>emb|CAD44622.1| MYB30 protein [Oryza sativa (japonica cultivar-group)]
Length = 142
Score = 77.8 bits (190), Expect = 1e-13
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = -2
Query: 589 YPLPYWSGYSPAEPPKKEETHEVVKPTAVLSKSPIHVDELVGMSKLSLGDSIGDSGPSSL 410
+ +P+W + P +ETHE+VKP V SKSPI+VDELVGMSKLS+G+S ++ +SL
Sbjct: 60 FSVPFWQNQKDEDGPV-QETHEIVKPVPVHSKSPINVDELVGMSKLSIGESNQETVSTSL 118
Query: 409 SRKLVEEGPSRPSAFHATP 353
S LV G +R SAFHA P
Sbjct: 119 SLNLV-GGQNRQSAFHANP 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,843,851
Number of Sequences: 1393205
Number of extensions: 11907326
Number of successful extensions: 44741
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 43126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44702
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
