Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001476A_C01 KMC001476A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568457.1| bZIP protein, G/HBF-1-related; protein id: At5g... 77 2e-13
dbj|BAB39175.1| RISBZ5 [Oryza sativa] 47 2e-04
pir||T03990 probable transcription activator - rice gi|556409|gb... 42 0.005
pir||T03991 probable transcription activator 2 - rice plasmid pB... 42 0.005
dbj|BAB39174.1| RISBZ4 [Oryza sativa] 42 0.005
>ref|NP_568457.1| bZIP protein, G/HBF-1-related; protein id: At5g24800.1, supported
by cDNA: gi_10954096 [Arabidopsis thaliana]
gi|10954097|gb|AAG25728.1|AF310223_1 bZIP protein BZO2H2
[Arabidopsis thaliana]
Length = 277
Score = 76.6 bits (187), Expect = 2e-13
Identities = 52/119 (43%), Positives = 67/119 (55%), Gaps = 4/119 (3%)
Frame = -1
Query: 633 TNNRVLKSGLEALRAKVKLAEDMVTRSSFT---NQILQNPCQLSTPPQLNSNLRGMAHVS 463
TNNRVLKS +E LR KVKLAED+V R S T NQ+LQ LS P S+L + S
Sbjct: 178 TNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQT--HLSPPSHSISSLHYTGNTS 235
Query: 462 PTITIHGDNASYNGIRVGEQNFSTLGFGNLDHMTYNNNNNVNNIGVISDAMSCVT-MWP 289
P IT+H D + + G+ + QN S+ G GN V S+A+SCV+ +WP
Sbjct: 236 PAITVHSDQSLFPGMTLSGQN-SSPGLGN----------------VSSEAVSCVSDIWP 277
>dbj|BAB39175.1| RISBZ5 [Oryza sativa]
Length = 295
Score = 47.0 bits (110), Expect = 2e-04
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -1
Query: 633 TNNRVLKSGLEALRAKVKLAEDMVTRSSFTNQILQNPCQLSTPPQLNSNLRGMAHVSPTI 454
T+NR+LKS +EALR KVK+AEDMV R++ + + QL P L+S R M +
Sbjct: 192 TDNRILKSDVEALRVKVKMAEDMVARAAMSCGL----GQLGLAPLLSS--RKMCQALDML 245
Query: 453 TI-HGDNASYNGIRVGEQ 403
++ D + G+ +G Q
Sbjct: 246 SLPRNDACGFKGLNLGRQ 263
>pir||T03990 probable transcription activator - rice gi|556409|gb|AAC37418.1|
transcriptional activator protein
Length = 298
Score = 42.4 bits (98), Expect = 0.005
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -1
Query: 633 TNNRVLKSGLEALRAKVKLAEDMVTRSSFT 544
T+NR+LKS +EALR KVK+AEDMV R + +
Sbjct: 199 TDNRILKSDVEALRVKVKMAEDMVARGALS 228
>pir||T03991 probable transcription activator 2 - rice plasmid pBC663
(fragment) gi|3287219|emb|CAA04639.1| RITA-2 protein
[Oryza sativa (japonica cultivar-group)]
Length = 199
Score = 42.4 bits (98), Expect = 0.005
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -1
Query: 633 TNNRVLKSGLEALRAKVKLAEDMVTRSSFT 544
T+NR+LKS +EALR KVK+AEDMV R + +
Sbjct: 101 TDNRILKSDVEALRVKVKMAEDMVARGALS 130
>dbj|BAB39174.1| RISBZ4 [Oryza sativa]
Length = 278
Score = 42.4 bits (98), Expect = 0.005
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -1
Query: 633 TNNRVLKSGLEALRAKVKLAEDMVTRSSFT 544
T+NR+LKS +EALR KVK+AEDMV R + +
Sbjct: 180 TDNRILKSDVEALRVKVKMAEDMVARGALS 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,639,253
Number of Sequences: 1393205
Number of extensions: 10640399
Number of successful extensions: 36522
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 28929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35065
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
