Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001475A_C02 KMC001475A_c02
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E86318 protein F15H18.4 [imported] - Arabidopsis thaliana g... 92 8e-18
gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|1837750... 92 8e-18
ref|NP_564055.1| expressed protein; protein id: At1g18490.1, sup... 92 8e-18
gb|AAM67070.1| unknown [Arabidopsis thaliana] 88 9e-17
ref|NP_198805.1| putative protein; protein id: At5g39890.1, supp... 87 2e-16
>pir||E86318 protein F15H18.4 [imported] - Arabidopsis thaliana
gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4
[Arabidopsis thaliana]
Length = 1702
Score = 91.7 bits (226), Expect = 8e-18
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Frame = -3
Query: 660 LYPTTGGNIHEFTAITPCAVLDVIGPPYSKEDGRDCSYYRDHPYAAFPNEEISEVKD--K 487
LYP TGGN+H FTA+TPCAVLD++ PPY + GR CSYY D+P++ F E + D K
Sbjct: 1613 LYPKTGGNLHCFTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGK 1672
Query: 486 NDSYAWLEEIEMPEN 442
D YAWL +I+ P++
Sbjct: 1673 EDEYAWLVQIDTPDD 1687
>gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|18377500|gb|AAL66916.1|
unknown protein [Arabidopsis thaliana]
Length = 226
Score = 91.7 bits (226), Expect = 8e-18
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Frame = -3
Query: 660 LYPTTGGNIHEFTAITPCAVLDVIGPPYSKEDGRDCSYYRDHPYAAFPNEEISEVKD--K 487
LYP TGGN+H FTA+TPCAVLD++ PPY + GR CSYY D+P++ F E + D K
Sbjct: 137 LYPKTGGNLHCFTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGK 196
Query: 486 NDSYAWLEEIEMPEN 442
D YAWL +I+ P++
Sbjct: 197 EDEYAWLVQIDTPDD 211
>ref|NP_564055.1| expressed protein; protein id: At1g18490.1, supported by cDNA:
94234. [Arabidopsis thaliana]
Length = 282
Score = 91.7 bits (226), Expect = 8e-18
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Frame = -3
Query: 660 LYPTTGGNIHEFTAITPCAVLDVIGPPYSKEDGRDCSYYRDHPYAAFPNEEISEVKD--K 487
LYP TGGN+H FTA+TPCAVLD++ PPY + GR CSYY D+P++ F E + D K
Sbjct: 193 LYPKTGGNLHCFTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGK 252
Query: 486 NDSYAWLEEIEMPEN 442
D YAWL +I+ P++
Sbjct: 253 EDEYAWLVQIDTPDD 267
>gb|AAM67070.1| unknown [Arabidopsis thaliana]
Length = 259
Score = 88.2 bits (217), Expect = 9e-17
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Frame = -3
Query: 660 LYPTTGGNIHEFTAITPCAVLDVIGPPYSKEDGRDCSYYRDHPYAAFPNEEISEVKD--K 487
LYP T GN+H FTA+TPCAVLD++ PPY + GR CSYY D+P++ F E + D K
Sbjct: 170 LYPKTVGNLHCFTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGK 229
Query: 486 NDSYAWLEEIEMPEN 442
D YAWL +I+ P++
Sbjct: 230 EDEYAWLVQIDTPDD 244
>ref|NP_198805.1| putative protein; protein id: At5g39890.1, supported by cDNA:
100590. [Arabidopsis thaliana]
gi|21536502|gb|AAM60834.1| unknown [Arabidopsis
thaliana] gi|27808558|gb|AAO24559.1| At5g39890
[Arabidopsis thaliana]
Length = 276
Score = 87.0 bits (214), Expect = 2e-16
Identities = 39/77 (50%), Positives = 55/77 (70%), Gaps = 1/77 (1%)
Frame = -3
Query: 663 VLYPTTGGNIHEFTAITPCAVLDVIGPPYSKEDGRDCSYYRDHPYAAFPNEEISEVKDKN 484
+LYP GGN+H FTA T CAVLDVIGPPYS GR C+YY D+P+++F + + +++
Sbjct: 187 ILYPADGGNMHCFTAKTACAVLDVIGPPYSDPAGRHCTYYFDYPFSSFSVDGVVVAEEEK 246
Query: 483 DSYAWLEE-IEMPENFS 436
+ YAWL+E E PE+ +
Sbjct: 247 EGYAWLKEREEKPEDLT 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,907,839
Number of Sequences: 1393205
Number of extensions: 11820859
Number of successful extensions: 25317
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 24688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25306
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
