Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001473A_C01 KMC001473A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB46679.1| proteophosphoglycan [Leishmania major] 37 0.25
dbj|BAC03887.1| unnamed protein product [Homo sapiens] 36 0.43
ref|XP_222315.1| similar to Bromodomain adjacent to zinc finger ... 36 0.43
ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens] 36 0.43
ref|NP_724932.1| CG11763-PA [Drosophila melanogaster] gi|2162753... 35 0.73
>emb|CAB46679.1| proteophosphoglycan [Leishmania major]
Length = 873
Score = 36.6 bits (83), Expect = 0.25
Identities = 23/71 (32%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Frame = -3
Query: 540 TSPSLSVLDASSLMSN-PRGFSSTVQLTETSPPKLSSDKLQQNSDAKAEAAAEEDSPKQD 364
++PS S ASS S+ P SS+ + +S P SS +S + A +A+ +P
Sbjct: 622 SAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 681
Query: 363 DTSSNSFSASS 331
+S+ S S+SS
Sbjct: 682 SSSAPSASSSS 692
>dbj|BAC03887.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 35.8 bits (81), Expect = 0.43
Identities = 23/72 (31%), Positives = 37/72 (50%)
Frame = -3
Query: 540 TSPSLSVLDASSLMSNPRGFSSTVQLTETSPPKLSSDKLQQNSDAKAEAAAEEDSPKQDD 361
+SPS S +SS S+P SS+ + +SP SS +S + + ++ SP
Sbjct: 102 SSPSSSNSSSSSSSSSPSSSSSS---SSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 158
Query: 360 TSSNSFSASSQS 325
+SS+S S+S S
Sbjct: 159 SSSSSSSSSPSS 170
>ref|XP_222315.1| similar to Bromodomain adjacent to zinc finger domain 2A
(Transcription termination factor-I interacting protein
5) (TTF-I interacting protein 5) (Tip5) [Rattus
norvegicus]
Length = 1675
Score = 35.8 bits (81), Expect = 0.43
Identities = 24/82 (29%), Positives = 43/82 (52%)
Frame = -3
Query: 579 DHPVVAIPQNYGMTSPSLSVLDASSLMSNPRGFSSTVQLTETSPPKLSSDKLQQNSDAKA 400
D+PV++ + P+LS +A SL++ S+++ ++ TSPP L LQ NS
Sbjct: 333 DNPVIS-----ALDCPALSNANAFSLLAEDSQTSASIFVSPTSPPVLGESVLQDNSFGLN 387
Query: 399 EAAAEEDSPKQDDTSSNSFSAS 334
+ E ++ +T S++F S
Sbjct: 388 SCSDSEQ--EEMETQSSNFQRS 407
>ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens]
Length = 252
Score = 35.8 bits (81), Expect = 0.43
Identities = 23/72 (31%), Positives = 37/72 (50%)
Frame = -3
Query: 540 TSPSLSVLDASSLMSNPRGFSSTVQLTETSPPKLSSDKLQQNSDAKAEAAAEEDSPKQDD 361
+SPS S +SS S+P SS+ + +SP SS +S + + ++ SP
Sbjct: 101 SSPSSSNSSSSSSSSSPSSSSSS---SSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 157
Query: 360 TSSNSFSASSQS 325
+SS+S S+S S
Sbjct: 158 SSSSSSSSSPSS 169
Score = 34.3 bits (77), Expect = 1.2
Identities = 23/72 (31%), Positives = 35/72 (47%)
Frame = -3
Query: 540 TSPSLSVLDASSLMSNPRGFSSTVQLTETSPPKLSSDKLQQNSDAKAEAAAEEDSPKQDD 361
+SPS S +S S+P SST +SP SS S + + +++ SP
Sbjct: 67 SSPSSSSPSSSHSSSSPSSSSST-----SSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSS 121
Query: 360 TSSNSFSASSQS 325
+SS+S +SS S
Sbjct: 122 SSSSSSPSSSSS 133
>ref|NP_724932.1| CG11763-PA [Drosophila melanogaster] gi|21627531|gb|AAF58795.2|
CG11763-PA [Drosophila melanogaster]
Length = 960
Score = 35.0 bits (79), Expect = 0.73
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = -3
Query: 537 SPSLSVLDASSLMSNPRGFSSTVQLTETSPPKLSSDKLQQNSDAKAEAAAEEDSPKQDDT 358
SP L+ + + ++P S T +T+PP +S Q D + + +E P Q D
Sbjct: 72 SPPLNASETEARENSPHDHSPTPTFHQTAPPPTTSSTAPQR-DEREQQQQQEAPPLQQDQ 130
Query: 357 SSNSFSASSQSLH 319
NS A Q LH
Sbjct: 131 QENS-PAQDQELH 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,008,822
Number of Sequences: 1393205
Number of extensions: 10961181
Number of successful extensions: 38036
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 35604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37950
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
