Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001472A_C01 KMC001472A_c01
(374 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_789072.1| putative integral membrane protein [Tropheryma ... 35 0.18
ref|NP_787245.1| unknown [Tropheryma whipplei str. Twist] gi|284... 35 0.18
ref|NP_192755.1| putative protein; protein id: At4g10170.1 [Arab... 35 0.18
ref|NP_194513.1| putative protein; protein id: At4g27840.1, supp... 33 1.2
dbj|BAB92457.1| P0698A10.27 [Oryza sativa (japonica cultivar-gro... 32 1.5
>ref|NP_789072.1| putative integral membrane protein [Tropheryma whipplei TW08/27]
gi|28410423|emb|CAD66809.1| putative integral membrane
protein [Tropheryma whipplei TW08/27]
Length = 701
Score = 35.4 bits (80), Expect = 0.18
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -3
Query: 345 LVICRGISCIR*NMIFLCVSF----ESLSYRNLSFSTALI*SNIHWFL*GSI*MEVTLFL 178
L++ R +SC ++F C+ F E + L+F T L W + ++ + ++L L
Sbjct: 77 LIVARTLSCCVVPVVFFCILFAFLTEKAEFSGLNFETYLTGPGFVWIIVLALVLLISLAL 136
Query: 177 LSVVSKILS*VLTVGTVLLVAPI 109
L +I V++ T+LL+ P+
Sbjct: 137 LFCKKRIQIAVISTITLLLLIPL 159
>ref|NP_787245.1| unknown [Tropheryma whipplei str. Twist] gi|28476124|gb|AAO44214.1|
unknown [Tropheryma whipplei str. Twist]
Length = 697
Score = 35.4 bits (80), Expect = 0.18
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -3
Query: 345 LVICRGISCIR*NMIFLCVSF----ESLSYRNLSFSTALI*SNIHWFL*GSI*MEVTLFL 178
L++ R +SC ++F C+ F E + L+F T L W + ++ + ++L L
Sbjct: 77 LIVARTLSCCVVPVVFFCILFAFLTEKAEFSGLNFETYLTGPGFVWIIVLALVLLISLAL 136
Query: 177 LSVVSKILS*VLTVGTVLLVAPI 109
L +I V++ T+LL+ P+
Sbjct: 137 LFCKKRIQIAVISTITLLLLIPL 159
>ref|NP_192755.1| putative protein; protein id: At4g10170.1 [Arabidopsis thaliana]
gi|7486316|pir||T04067 hypothetical protein F28M11.90 -
Arabidopsis thaliana gi|4538981|emb|CAB39769.1| putative
protein [Arabidopsis thaliana]
gi|7267713|emb|CAB78140.1| putative protein [Arabidopsis
thaliana] gi|28416649|gb|AAO42855.1| At4g10170
[Arabidopsis thaliana]
Length = 254
Score = 35.4 bits (80), Expect = 0.18
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3
Query: 372 VCIILFVIWLVICRGISCIR 313
+C+ LF IWL ICRGI C R
Sbjct: 234 ICLTLFGIWLAICRGIECTR 253
>ref|NP_194513.1| putative protein; protein id: At4g27840.1, supported by cDNA:
gi_17978988 [Arabidopsis thaliana]
gi|7487475|pir||T09023 hypothetical protein T27E11.80 -
Arabidopsis thaliana gi|4972115|emb|CAB43972.1| putative
protein [Arabidopsis thaliana]
gi|7269637|emb|CAB81433.1| putative protein [Arabidopsis
thaliana] gi|17978989|gb|AAL47455.1| AT4g27840/T27E11_80
[Arabidopsis thaliana] gi|22655346|gb|AAM98265.1|
At4g27840/T27E11_80 [Arabidopsis thaliana]
Length = 260
Score = 32.7 bits (73), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 372 VCIILFVIWLVICRGISCI 316
+C++LF IWL IC+G CI
Sbjct: 240 ICLVLFGIWLWICQGFQCI 258
>dbj|BAB92457.1| P0698A10.27 [Oryza sativa (japonica cultivar-group)]
Length = 242
Score = 32.3 bits (72), Expect = 1.5
Identities = 7/18 (38%), Positives = 17/18 (93%)
Frame = -3
Query: 366 IILFVIWLVICRGISCIR 313
++LFV+W+++C+G +C++
Sbjct: 224 LVLFVVWMIVCKGFNCVQ 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,127,459
Number of Sequences: 1393205
Number of extensions: 6255026
Number of successful extensions: 12615
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12613
length of database: 448,689,247
effective HSP length: 100
effective length of database: 309,368,747
effective search space used: 7424849928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
