Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001468A_C01 KMC001468A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172113.1| Ring3-like bromodomain protein; protein id: At1... 41 0.010
pir||T14462 non intermediate filament IFA binding protein - wild... 41 0.013
gb|AAL07107.1| unknown protein [Arabidopsis thaliana] 40 0.017
ref|NP_564037.1| expressed protein; protein id: At1g17790.1, sup... 40 0.017
dbj|BAC03864.1| unnamed protein product [Homo sapiens] 39 0.049
>ref|NP_172113.1| Ring3-like bromodomain protein; protein id: At1g06230.1
[Arabidopsis thaliana] gi|25406905|pir||A86198
hypothetical protein [imported] - Arabidopsis thaliana
gi|8844128|gb|AAF80220.1|AC025290_9 Contains similarity
to a Ring3 protein from Homo sapiens gi|133157 and
contains a bromodomain PF|00439. EST gb|F14211 comes
from this gene. [Arabidopsis thaliana]
Length = 766
Score = 41.2 bits (95), Expect = 0.010
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -1
Query: 592 SSSSDSGSSSSDSDSDSSSASGSD 521
SSSS S SSSSDSDSDSSS+SGSD
Sbjct: 741 SSSSSSSSSSSDSDSDSSSSSGSD 764
>pir||T14462 non intermediate filament IFA binding protein - wild cabbage
(fragment) gi|1313926|emb|CAA66267.1| non intermediate
filament IFA binding protein [Brassica oleracea]
Length = 165
Score = 40.8 bits (94), Expect = 0.013
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1
Query: 592 SSSSDSGSSSSDSDSDSSSASGSD 521
SSSSD+GS SSDSDSDSSS GSD
Sbjct: 139 SSSSDTGSGSSDSDSDSSSGRGSD 162
>gb|AAL07107.1| unknown protein [Arabidopsis thaliana]
Length = 487
Score = 40.4 bits (93), Expect = 0.017
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1
Query: 592 SSSSDSGSSSSDSDSDSSSASGSD 521
SSSSDSGS SSD+DSDSSS GSD
Sbjct: 461 SSSSDSGSCSSDTDSDSSSGRGSD 484
>ref|NP_564037.1| expressed protein; protein id: At1g17790.1, supported by cDNA:
gi_15810438 [Arabidopsis thaliana]
gi|23297757|gb|AAN13019.1| unknown protein [Arabidopsis
thaliana]
Length = 487
Score = 40.4 bits (93), Expect = 0.017
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -1
Query: 592 SSSSDSGSSSSDSDSDSSSASGSD 521
SSSSDSGS SSD+DSDSSS GSD
Sbjct: 461 SSSSDSGSCSSDTDSDSSSGRGSD 484
>dbj|BAC03864.1| unnamed protein product [Homo sapiens]
Length = 781
Score = 38.9 bits (89), Expect = 0.049
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = -1
Query: 592 SSSSDSGSSSSDSDSDSSSASGSDAESQGT 503
SSSS SGSSSS SDS+SSS S S+ ES +
Sbjct: 439 SSSSSSGSSSSSSDSESSSGSDSETESSSS 468
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,564,087
Number of Sequences: 1393205
Number of extensions: 9529797
Number of successful extensions: 66286
Number of sequences better than 10.0: 372
Number of HSP's better than 10.0 without gapping: 34387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55367
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
