Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001466A_C01 KMC001466A_c01
(841 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T33156 hypothetical protein F56H1.1 - Caenorhabditis elegans 34 2.3
ref|NP_491673.1| Sterol-sensing domain protein required for apic... 34 2.3
ref|NP_242151.1| RNA polymerase sigma factor (sigma K) precursor... 33 4.0
ref|NP_045270.1| 53 [Equine herpesvirus 4] gi|11278243|pir||T425... 33 5.2
ref|NP_702823.1| hypothetical protein [Plasmodium falciparum 3D7... 32 8.9
>pir||T33156 hypothetical protein F56H1.1 - Caenorhabditis elegans
Length = 969
Score = 34.3 bits (77), Expect = 2.3
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 LNKLNYVMIIM--STTIFITHHNFPKLGHCNTYFPFL*VPHTFHLLLLIC----TPFFLS 426
LN + +V++I S F+ NFPK + +T+ FL HT + L C PFF++
Sbjct: 431 LNLVTFVLLIAIGSDDAFLLKSNFPKHLNEDTFHTFL--SHTSFTMFLTCFSTIVPFFIN 488
Query: 427 RFSFILSLKSLKLFRNGKL**NQWRVLS*CPVSL 528
S ++ + LF + N + V+S P L
Sbjct: 489 ITSNVIVFRCFGLFAGVTVIFNYFMVVSFLPAFL 522
>ref|NP_491673.1| Sterol-sensing domain protein required for apical sorting in
epithelial cells, dispatched related (104.0 kD) (che-14)
[Caenorhabditis elegans] gi|7710961|emb|CAB90211.1|
CHE-14 protein [Caenorhabditis elegans]
gi|14916329|gb|AAC19198.2| Dispatched family protein 1
[Caenorhabditis elegans]
Length = 917
Score = 34.3 bits (77), Expect = 2.3
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Frame = +1
Query: 265 LNKLNYVMIIM--STTIFITHHNFPKLGHCNTYFPFL*VPHTFHLLLLIC----TPFFLS 426
LN + +V++I S F+ NFPK + +T+ FL HT + L C PFF++
Sbjct: 379 LNLVTFVLLIAIGSDDAFLLKSNFPKHLNEDTFHTFL--SHTSFTMFLTCFSTIVPFFIN 436
Query: 427 RFSFILSLKSLKLFRNGKL**NQWRVLS*CPVSL 528
S ++ + LF + N + V+S P L
Sbjct: 437 ITSNVIVFRCFGLFAGVTVIFNYFMVVSFLPAFL 470
>ref|NP_242151.1| RNA polymerase sigma factor (sigma K) precursor [Bacillus
halodurans] gi|25288462|pir||E83810 RNA polymerase sigma
factor (sigma K) precursor sigK [imported] - Bacillus
halodurans (strain C-125) gi|10173901|dbj|BAB05004.1|
RNA polymerase sigma factor (sigma K) precursor
[Bacillus halodurans]
Length = 235
Score = 33.5 bits (75), Expect = 4.0
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +3
Query: 15 TDKKGNSVNILDAQGDDHNIIHDLEESRKPFISLKKCKFPLRSGLEQSFFHKFNRAKIYK 194
TDK+GN + ++D +D I D + + + + L ++ +F +
Sbjct: 136 TDKEGNEITLIDVLQEDSEDIADSIQLKMEKKQIYEYIHVLDDREKEVIVGRFGLDLEEE 195
Query: 195 TKKRVLVHEWWGG*SRAHVSRFEP*QI-KLCHDHYEHHH 308
+R + E G SR++VSR E + KL H+ Y+H+H
Sbjct: 196 RTQREIAKEL--GISRSYVSRIEKRALMKLFHEFYKHNH 232
>ref|NP_045270.1| 53 [Equine herpesvirus 4] gi|11278243|pir||T42596 gene 53 protein -
equine herpesvirus 4 (strain NS80567)
gi|2605999|gb|AAC59571.1| 53 [Equine herpesvirus 4]
Length = 887
Score = 33.1 bits (74), Expect = 5.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 45 LDAQGDDHNIIHDLEESRKPFISLKKCKFPLRSGLEQSFFHKFNRAKIYKTKKRV 209
L + GD NI++ L ES + +S++ C+FPL + SF R Y +K +
Sbjct: 510 LASVGDSINILYTLLESNRMLVSIEGCQFPLTAACFCSFLQDL-RLDAYAARKEL 563
>ref|NP_702823.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498239|emb|CAD49210.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2031
Score = 32.3 bits (72), Expect = 8.9
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 6 KYHTDKKGNSVNILDAQGDDHNIIHDL--EESRKPFISLKKCKFPLRSGLEQSFFHKFNR 179
K +KK +L+ + DD +I HD E I LKK K+ +FFHK
Sbjct: 375 KKKKEKKKRKTELLNIKVDDISIYHDYRHEHISSTDIHLKKRKYKFFFFYNMNFFHKDKN 434
Query: 180 AKIYKTKKRVLVH 218
+ KT +++H
Sbjct: 435 CILQKTS--IIIH 445
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,774,752
Number of Sequences: 1393205
Number of extensions: 14316307
Number of successful extensions: 37768
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36642
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43758763209
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
