Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001465A_C02 KMC001465A_c02
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB88665.1| tubby-like protein [Cicer arietinum] 209 2e-53
ref|NP_179420.2| F-box containing tubby family protein; protein ... 170 1e-41
pir||E84562 probable Tub family protein [imported] - Arabidopsis... 170 1e-41
ref|NP_175160.1| F-box containing tubby family protein; protein ... 166 3e-40
gb|AAN72008.1| unknown protein [Arabidopsis thaliana] 160 9e-39
>emb|CAB88665.1| tubby-like protein [Cicer arietinum]
Length = 411
Score = 209 bits (533), Expect = 2e-53
Identities = 100/116 (86%), Positives = 107/116 (92%)
Frame = -3
Query: 605 PAADSNSGSLSELPALSQDSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLAA 426
P DS SG+LSELP LSQ SVEPLVLKNKAPRWHEQLQCWCLNF GRVTVASVKNFQL A
Sbjct: 296 PMTDSYSGNLSELPELSQGSVEPLVLKNKAPRWHEQLQCWCLNFVGRVTVASVKNFQLVA 355
Query: 425 SVDPSHNVSAAEQEKVILQFGKIGKDMFTMDYRYPLSAFQAFAICLSTFDTKPACE 258
+VDPSHNVS+ EQE+VILQFGKIGKD+FTMDY YPLSAFQAFAICL++FDTKPACE
Sbjct: 356 AVDPSHNVSSEEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 411
>ref|NP_179420.2| F-box containing tubby family protein; protein id: At2g18280.1
[Arabidopsis thaliana] gi|27372512|gb|AAK98801.1|
tubby-like protein 2 [Arabidopsis thaliana]
Length = 394
Score = 170 bits (431), Expect = 1e-41
Identities = 78/95 (82%), Positives = 86/95 (90%)
Frame = -3
Query: 542 EPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLAASVDPSHNVSAAEQEKVILQFG 363
+PLVLKNK+PRWHEQLQCWCLNFKGRVTVASVKNFQL A +D S + E E+VILQFG
Sbjct: 299 QPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLDAPPEEHERVILQFG 358
Query: 362 KIGKDMFTMDYRYPLSAFQAFAICLSTFDTKPACE 258
KIGKD+FTMDYRYPLSAFQAFAIC+S+FDTKPACE
Sbjct: 359 KIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393
>pir||E84562 probable Tub family protein [imported] - Arabidopsis thaliana
gi|4309738|gb|AAD15508.1| putative Tub family protein
[Arabidopsis thaliana]
Length = 386
Score = 170 bits (431), Expect = 1e-41
Identities = 78/95 (82%), Positives = 86/95 (90%)
Frame = -3
Query: 542 EPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLAASVDPSHNVSAAEQEKVILQFG 363
+PLVLKNK+PRWHEQLQCWCLNFKGRVTVASVKNFQL A +D S + E E+VILQFG
Sbjct: 291 QPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLDAPPEEHERVILQFG 350
Query: 362 KIGKDMFTMDYRYPLSAFQAFAICLSTFDTKPACE 258
KIGKD+FTMDYRYPLSAFQAFAIC+S+FDTKPACE
Sbjct: 351 KIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 385
>ref|NP_175160.1| F-box containing tubby family protein; protein id: At1g47270.1
[Arabidopsis thaliana] gi|25405194|pir||E96513 unknown
protein, 3155-1759 [imported] - Arabidopsis thaliana
gi|12325396|gb|AAG52638.1|AC079677_2 unknown protein;
3155-1759 [Arabidopsis thaliana]
Length = 388
Score = 166 bits (419), Expect = 3e-40
Identities = 82/119 (68%), Positives = 93/119 (77%), Gaps = 3/119 (2%)
Frame = -3
Query: 605 PAADSNSGSLSELPALSQDSVEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQL-- 432
P D SG+L + EPL+LKNK+PRWHEQLQCWCLNFKGRVTVASVKNFQL
Sbjct: 274 PLMDFCSGNLGGESVIK----EPLILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVA 329
Query: 431 -AASVDPSHNVSAAEQEKVILQFGKIGKDMFTMDYRYPLSAFQAFAICLSTFDTKPACE 258
AA + N+ EQ++VILQFGKIGKD+FTMDYRYP+SAFQAFAICLS+FDTKP CE
Sbjct: 330 AAAEAGKNMNIPEEEQDRVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPVCE 388
>gb|AAN72008.1| unknown protein [Arabidopsis thaliana]
Length = 267
Score = 160 bits (406), Expect = 9e-39
Identities = 83/129 (64%), Positives = 93/129 (71%), Gaps = 16/129 (12%)
Frame = -3
Query: 596 DSNSGSLSELPALSQDSVE-----PLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQL 432
D +S SE+ D+ E PL+LKNK PRWHEQLQCWCLNF+GRVTVASVKNFQL
Sbjct: 139 DFSSSRFSEMGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQL 198
Query: 431 AASVDPSHNVSAA-----------EQEKVILQFGKIGKDMFTMDYRYPLSAFQAFAICLS 285
A+ P + A EQ+KVILQFGK+GKDMFTMDYRYPLSAFQAFAICLS
Sbjct: 199 VAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLS 258
Query: 284 TFDTKPACE 258
+FDTK ACE
Sbjct: 259 SFDTKLACE 267
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,730,986
Number of Sequences: 1393205
Number of extensions: 10120950
Number of successful extensions: 29137
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 28165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29049
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
