Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001456A_C01 KMC001456A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA42576.1| GLP_487_14754_11830 [Giardia lamblia ATCC 50803] 32 3.9
gb|AAO49828.1| putative fimbrial-like protein YadK [Salmonella e... 32 5.1
>gb|EAA42576.1| GLP_487_14754_11830 [Giardia lamblia ATCC 50803]
Length = 974
Score = 32.0 bits (71), Expect = 3.9
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 317 RLAQSKEDS*RIHAACSLWHFRHMMAASYSPDARSMLSDGPEIKSAYCHTCKSFYY 484
+LA RI A C+L R + + +S ++ + S P+I+++ TC S+YY
Sbjct: 533 KLADDALQRTRITAKCALLVMRILRLSFWSKSSQLLGSKAPKIEASVRETCLSYYY 588
>gb|AAO49828.1| putative fimbrial-like protein YadK [Salmonella enterica subsp.
enterica serovar Dublin]
Length = 197
Score = 31.6 bits (70), Expect = 5.1
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = +1
Query: 217 CLVVFLSGLLTSFLDRSSYLEAHSVQSESITVQ*TCTVE 333
C +F SGL T+FL R Y + H+V + + TC +E
Sbjct: 7 CYFLFCSGLATAFLSRPGYAD-HNVDVTATVINNTCRLE 44
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,837,017
Number of Sequences: 1393205
Number of extensions: 8943973
Number of successful extensions: 17795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17794
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
