Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001455A_C01 KMC001455A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis ... 209 4e-53
gb|AAK55665.1|AF378862_1 AT5g62000/mtg10_20 [Arabidopsis thalian... 209 4e-53
ref|NP_201006.1| auxin response factor - like protein; protein i... 200 1e-50
dbj|BAB85913.1| auxin response factor 2 [Oryza sativa] 157 1e-37
dbj|BAB92903.1| auxin response factor 2 [Oryza sativa (japonica ... 157 1e-37
>dbj|BAB10162.1| auxin response factor-like protein [Arabidopsis thaliana]
gi|23397283|gb|AAN31923.1| auxin response factor
[Arabidopsis thaliana]
Length = 859
Score = 209 bits (531), Expect = 4e-53
Identities = 111/164 (67%), Positives = 122/164 (73%), Gaps = 16/164 (9%)
Frame = +2
Query: 242 MASSEVAMKGNC--PNHGDGGRS---------VTTEGQNGHS-----ASTARDAEAALYR 373
MASSEV+MKGN N G S V EGQ +S A A D EAALYR
Sbjct: 1 MASSEVSMKGNRGGDNFSSSGFSDPKETRNVSVAGEGQKSNSTRSAAAERALDPEAALYR 60
Query: 374 ELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKILCRVINVQ 553
ELWHACAGPLVTVPR+ +RVFYFPQGHIEQVEASTNQ A++ MP+YDLPSK+LCRVINV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVD 120
Query: 554 LKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPXXRFHVHSF 685
LKAE DTDEV+AQ+TLLPE NQDENA+EKE P PP RF VHSF
Sbjct: 121 LKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSF 164
>gb|AAK55665.1|AF378862_1 AT5g62000/mtg10_20 [Arabidopsis thaliana]
gi|24111405|gb|AAN46837.1| At5g62000/mtg10_20
[Arabidopsis thaliana]
Length = 678
Score = 209 bits (531), Expect = 4e-53
Identities = 111/164 (67%), Positives = 122/164 (73%), Gaps = 16/164 (9%)
Frame = +2
Query: 242 MASSEVAMKGNC--PNHGDGGRS---------VTTEGQNGHS-----ASTARDAEAALYR 373
MASSEV+MKGN N G S V EGQ +S A A D EAALYR
Sbjct: 1 MASSEVSMKGNRGGDNFSSSGFSDPKETRNVSVAGEGQKSNSTRSAAAERALDPEAALYR 60
Query: 374 ELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKILCRVINVQ 553
ELWHACAGPLVTVPR+ +RVFYFPQGHIEQVEASTNQ A++ MP+YDLPSK+LCRVINV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVD 120
Query: 554 LKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPXXRFHVHSF 685
LKAE DTDEV+AQ+TLLPE NQDENA+EKE P PP RF VHSF
Sbjct: 121 LKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSF 164
>ref|NP_201006.1| auxin response factor - like protein; protein id: At5g62000.1
[Arabidopsis thaliana]
Length = 371
Score = 200 bits (509), Expect = 1e-50
Identities = 109/164 (66%), Positives = 120/164 (72%), Gaps = 16/164 (9%)
Frame = +2
Query: 242 MASSEVAMKGNC--PNHGDGGRS---------VTTEGQNGHS-----ASTARDAEAALYR 373
MASSEV+MKGN N G S V EGQ +S A A D EAALYR
Sbjct: 1 MASSEVSMKGNRGGDNFSSSGFSDPKETRNVSVAGEGQKSNSTRSAAAERALDPEAALYR 60
Query: 374 ELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKILCRVINVQ 553
ELWHACAGPLVTVPR+ +RVFYFPQGHIEQ ASTNQ A++ MP+YDLPSK+LCRVINV
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQ--ASTNQAAEQQMPLYDLPSKLLCRVINVD 118
Query: 554 LKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPPPPXXRFHVHSF 685
LKAE DTDEV+AQ+TLLPE NQDENA+EKE P PP RF VHSF
Sbjct: 119 LKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSF 162
>dbj|BAB85913.1| auxin response factor 2 [Oryza sativa]
Length = 791
Score = 157 bits (397), Expect = 1e-37
Identities = 79/109 (72%), Positives = 87/109 (79%), Gaps = 2/109 (1%)
Frame = +2
Query: 365 LYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKILCRVI 544
LY ELWHACAGPLVTVPR G+ VFYFPQGHIEQVEAS NQVAD M +YDLPSK+LCRV+
Sbjct: 4 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVL 63
Query: 545 NVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPP--PPXXRFHVHSF 685
NV+LKAE DTDEV+AQV L+PEP Q+E AVEK P P R V SF
Sbjct: 64 NVELKAEQDTDEVYAQVMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSF 112
>dbj|BAB92903.1| auxin response factor 2 [Oryza sativa (japonica cultivar-group)]
Length = 826
Score = 157 bits (397), Expect = 1e-37
Identities = 79/109 (72%), Positives = 87/109 (79%), Gaps = 2/109 (1%)
Frame = +2
Query: 365 LYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADEHMPVYDLPSKILCRVI 544
LY ELWHACAGPLVTVPR G+ VFYFPQGHIEQVEAS NQVAD M +YDLPSK+LCRV+
Sbjct: 16 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVL 75
Query: 545 NVQLKAEPDTDEVFAQVTLLPEPNQDENAVEKEPPP--PPXXRFHVHSF 685
NV+LKAE DTDEV+AQV L+PEP Q+E AVEK P P R V SF
Sbjct: 76 NVELKAEQDTDEVYAQVMLMPEPEQNEMAVEKTTPTSGPVQARPPVRSF 124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,767,142
Number of Sequences: 1393205
Number of extensions: 16462328
Number of successful extensions: 72648
Number of sequences better than 10.0: 375
Number of HSP's better than 10.0 without gapping: 57172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69366
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
