Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001454A_C03 KMC001454A_c03
(1424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_240841.1| hypothetical protein XP_240841 [Rattus norvegicus] 35 3.0
dbj|BAB86078.1| P0506A10.11 [Oryza sativa (japonica cultivar-gro... 34 6.6
ref|XP_219492.1| similar to Lymphocyte-specific protein 1 (Prote... 33 8.6
>ref|XP_240841.1| hypothetical protein XP_240841 [Rattus norvegicus]
Length = 298
Score = 35.0 bits (79), Expect = 3.0
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Frame = -1
Query: 440 MKPGGAIYT-HYASHQFYATHKHLSYTD---SKQEPRGGDRCDSRGIGRGHEGFD*RGRE 273
+ PG A++ ++ S + +THKH +D S + R D++G R + RG+
Sbjct: 194 LPPGEALWKQNFVSDIYMSTHKHKLLSDHTVSIWKQATSARMDAQGPNRHYTDLSQRGQR 253
Query: 272 EGIDERMCYIECAEIGRERVRVRLLPDGTSSVALQAGPVHHRL 144
D C+IE G ++ ++ + TSS + P RL
Sbjct: 254 SLTDNAHCFIEQPGTGLDQGALKNEKNRTSSRSTLKAPAWQRL 296
>dbj|BAB86078.1| P0506A10.11 [Oryza sativa (japonica cultivar-group)]
gi|22093605|dbj|BAC06901.1| P0674H09.24 [Oryza sativa
(japonica cultivar-group)]
Length = 242
Score = 33.9 bits (76), Expect = 6.6
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = -1
Query: 350 EPRGGDRCDSRGIGRGHEGFD*RGREEGIDERMCYIECAEIGRERVRVRL 201
E RGG+ + R IG G + +GREEG D R Y+ EI +R R R+
Sbjct: 2 EGRGGEGREKREIGWGLRRYGIKGREEGYDIR--YVRFTEILDDRRRSRI 49
>ref|XP_219492.1| similar to Lymphocyte-specific protein 1 (Protein pp52) (52 kDa
phosphoprotein) (Lymphocyte-specific antigen WP34) (S37
protein) [Rattus norvegicus]
Length = 524
Score = 33.5 bits (75), Expect = 8.6
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = -3
Query: 168 SGPRPSPALKVAPRCKSMNRSIRERRSRENDDTMEEQVFVWV*VLVR 28
S P SP +K+A R +S+NRSI++R +E++V W+ V +R
Sbjct: 323 SSPPLSPTVKLADRTESLNRSIQKRFVCVLSGILEDRVGEWLPVEIR 369
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,252,165,669
Number of Sequences: 1393205
Number of extensions: 29128081
Number of successful extensions: 76922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76841
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 94298017564
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
