Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001453A_C01 KMC001453A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86559.1| contains ESTs AU165931(E60813),AU165930(E60813)~... 64 8e-10
pir||D86478 protein F15O4.11 [imported] - Arabidopsis thaliana g... 56 3e-07
ref|NP_174927.1| hypothetical protein; protein id: At1g39990.1 [... 34 1.1
pir||T18500 hypothetical protein C0765c - malaria parasite (Plas... 33 1.9
ref|NP_473286.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.9
>dbj|BAB86559.1| contains ESTs AU165931(E60813),AU165930(E60813)~hypothetical
protein~similar to Arabidopsis thaliana
chromosome1,F15O4.11 [Oryza sativa (japonica
cultivar-group)] gi|20146507|dbj|BAB89286.1| P0491F11.22
[Oryza sativa (japonica cultivar-group)]
Length = 1317
Score = 64.3 bits (155), Expect = 8e-10
Identities = 31/68 (45%), Positives = 48/68 (70%)
Frame = -2
Query: 510 KYWSQLQMLLKKMLATMLPSSTNNSPSQSSSSTSRIFGDGGKIRELYEITLKGTDMVQLH 331
K+WSQLQ LLK MLA P++ S Q+++S SR GD K++E+Y ++LK T + QLH
Sbjct: 1255 KFWSQLQRLLKSMLAAARPAA---SVGQANASNSR--GDTAKLKEMYRLSLKSTSLGQLH 1309
Query: 330 SMYSLWIS 307
+++ +W+S
Sbjct: 1310 ALHKIWVS 1317
>pir||D86478 protein F15O4.11 [imported] - Arabidopsis thaliana
gi|8778377|gb|AAF79385.1|AC007887_44 F15O4.11
[Arabidopsis thaliana]
Length = 1465
Score = 55.8 bits (133), Expect = 3e-07
Identities = 30/65 (46%), Positives = 43/65 (66%)
Frame = -2
Query: 510 KYWSQLQMLLKKMLATMLPSSTNNSPSQSSSSTSRIFGDGGKIRELYEITLKGTDMVQLH 331
K+ +QLQM+LK+MLA LPS N S T GD GK+RELY+ +LK T++ L+
Sbjct: 1374 KFMAQLQMVLKRMLALSLPSEGANK-----SQTCGRSGDSGKLRELYKTSLKSTNLCDLN 1428
Query: 330 SMYSL 316
+M++L
Sbjct: 1429 AMHAL 1433
>ref|NP_174927.1| hypothetical protein; protein id: At1g39990.1 [Arabidopsis
thaliana]
Length = 543
Score = 33.9 bits (76), Expect = 1.1
Identities = 17/42 (40%), Positives = 22/42 (51%)
Frame = +3
Query: 237 KFQDKMIKRCGMQVKNVHGKFPITISTSCTCYEVGPCLYPSR 362
KFQDK+I +C + N+H T STS + P PSR
Sbjct: 394 KFQDKIIHKCVKAIDNMHKAISFTTSTSAITRDNSPEDMPSR 435
>pir||T18500 hypothetical protein C0765c - malaria parasite (Plasmodium
falciparum)
Length = 441
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -1
Query: 505 LESVADAFEENVGYNASIKYKQFSLSIIFFNI*NIWRWWKDQGTLRDNLEGY 350
L + D F+ NV + IK KQF + ++ N+ NI+ + +D +DN+E Y
Sbjct: 207 LSNSYDCFKSNVIF---IKAKQFKKNYVYDNLINIYTYLQDSEIQQDNIEVY 255
>ref|NP_473286.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7768290|emb|CAB11139.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 518
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -1
Query: 505 LESVADAFEENVGYNASIKYKQFSLSIIFFNI*NIWRWWKDQGTLRDNLEGY 350
L + D F+ NV + IK KQF + ++ N+ NI+ + +D +DN+E Y
Sbjct: 207 LSNSYDCFKSNVIF---IKAKQFKKNYVYDNLINIYTYLQDSEIQQDNIEVY 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,662,545
Number of Sequences: 1393205
Number of extensions: 9181972
Number of successful extensions: 20555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20483
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
