Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001452A_C01 KMC001452A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201236.1| arabinogalactan-protein (AGP1); protein id: At5... 68 7e-13
gb|AAM63495.1| arabinogalactan-protein [Arabidopsis thaliana] 68 2e-12
gb|AAK91454.1| AT5g64310/MSJ1_15 [Arabidopsis thaliana] gi|20147... 65 6e-12
gb|AAM61027.1| unknown [Arabidopsis thaliana] 65 2e-11
ref|NP_569011.1| arabinogalactan-protein (AGP7); protein id: At5... 64 4e-11
>ref|NP_201236.1| arabinogalactan-protein (AGP1); protein id: At5g64310.1, supported
by cDNA: 25423., supported by cDNA: gi_15215817,
supported by cDNA: gi_20147408, supported by cDNA:
gi_3883119 [Arabidopsis thaliana]
gi|3883120|gb|AAC77823.1| arabinogalactan-protein
[Arabidopsis thaliana]
Length = 131
Score = 67.8 bits (164), Expect(2) = 7e-13
Identities = 37/86 (43%), Positives = 50/86 (58%)
Frame = -3
Query: 451 AASPRKSLSPSPAVSPSAQTPAASPPTPVESGPSPSPATVHSPPASSDAPAVTPSSISSP 272
A SP+K +P+PA S A+ TP S PSP SP A D+PA++PS+IS
Sbjct: 40 APSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPSPPLADSPTA--DSPALSPSAISDS 97
Query: 271 PSEAQSPSPSGAALNRFSVAGSAAVV 194
P+EA P+ GA N+F+ GS AV+
Sbjct: 98 PTEAPGPAQGGAVSNKFASFGSVAVM 123
Score = 26.9 bits (58), Expect(2) = 7e-13
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = -2
Query: 530 AAFLVSSAVAHAPASAPA 477
AA L+SSAVA +PA AP+
Sbjct: 13 AALLISSAVAQSPAPAPS 30
>gb|AAM63495.1| arabinogalactan-protein [Arabidopsis thaliana]
Length = 131
Score = 67.8 bits (164), Expect(2) = 2e-12
Identities = 37/86 (43%), Positives = 50/86 (58%)
Frame = -3
Query: 451 AASPRKSLSPSPAVSPSAQTPAASPPTPVESGPSPSPATVHSPPASSDAPAVTPSSISSP 272
A SP+K +P+PA S A+ TP S PSP SP A D+PA++PS+IS
Sbjct: 40 APSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPSPPLADSPTA--DSPALSPSAISDS 97
Query: 271 PSEAQSPSPSGAALNRFSVAGSAAVV 194
P+EA P+ GA N+F+ GS AV+
Sbjct: 98 PTEAPGPAQGGAVSNKFASFGSVAVM 123
Score = 25.4 bits (54), Expect(2) = 2e-12
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -2
Query: 527 AFLVSSAVAHAPASAPA 477
A L+SSAVA +PA AP+
Sbjct: 14 ALLISSAVAQSPAPAPS 30
>gb|AAK91454.1| AT5g64310/MSJ1_15 [Arabidopsis thaliana] gi|20147409|gb|AAM10414.1|
AT5g64310/MSJ1_15 [Arabidopsis thaliana]
Length = 131
Score = 64.7 bits (156), Expect(2) = 6e-12
Identities = 36/86 (41%), Positives = 49/86 (56%)
Frame = -3
Query: 451 AASPRKSLSPSPAVSPSAQTPAASPPTPVESGPSPSPATVHSPPASSDAPAVTPSSISSP 272
A SP+K +P+PA S A+ TP S PSP SP A D+ A++PS+IS
Sbjct: 40 APSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPSPPLADSPTA--DSTALSPSAISDS 97
Query: 271 PSEAQSPSPSGAALNRFSVAGSAAVV 194
P+EA P+ GA N+F+ GS AV+
Sbjct: 98 PTEAPGPAQGGAVSNKFASFGSVAVM 123
Score = 26.9 bits (58), Expect(2) = 6e-12
Identities = 12/18 (66%), Positives = 15/18 (82%)
Frame = -2
Query: 530 AAFLVSSAVAHAPASAPA 477
AA L+SSAVA +PA AP+
Sbjct: 13 AALLISSAVAQSPAPAPS 30
>gb|AAM61027.1| unknown [Arabidopsis thaliana]
Length = 130
Score = 65.1 bits (157), Expect(2) = 2e-11
Identities = 37/91 (40%), Positives = 54/91 (58%), Gaps = 2/91 (2%)
Frame = -3
Query: 457 PVAASPRKSLSPSPAVSPSAQTPAASPPTPVESGPSPSPATVHSPPASSDAPAVTPSSIS 278
P AA+P + +P PAVSP+ P +SPP+ S PSPS + P + + P V+P ++
Sbjct: 41 PPAATPAPTTTPPPAVSPA---PTSSPPS---SAPSPSSDAPTASPPAPEGPGVSPGDLA 94
Query: 277 SPPSEAQSPSPSGAALNRFSVAGS--AAVVF 191
PS+A +P P+ A N+ V GS AAVV+
Sbjct: 95 PTPSDASAPPPNAALTNKAFVVGSLFAAVVY 125
Score = 37.4 bits (85), Expect = 0.11
Identities = 20/49 (40%), Positives = 26/49 (52%), Gaps = 13/49 (26%)
Frame = -3
Query: 355 PSPSPATVHSP-------------PASSDAPAVTPSSISSPPSEAQSPS 248
P+PSP T +P P ++ PAV+P+ SSPPS A SPS
Sbjct: 24 PAPSPTTTVTPPPVATPPPAATPAPTTTPPPAVSPAPTSSPPSSAPSPS 72
Score = 24.6 bits (52), Expect(2) = 2e-11
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -2
Query: 527 AFLVSSAVAHAPASAPALSPTRPPCGCFP 441
A +S +A APA +P + T PP P
Sbjct: 13 ALFTTSCLAQAPAPSPTTTVTPPPVATPP 41
>ref|NP_569011.1| arabinogalactan-protein (AGP7); protein id: At5g65390.1, supported
by cDNA: 108595., supported by cDNA: gi_15215665,
supported by cDNA: gi_20334897 [Arabidopsis thaliana]
gi|9759619|dbj|BAB11561.1| gene_id:MNA5.12~unknown
protein [Arabidopsis thaliana]
gi|15215666|gb|AAK91378.1| AT5g65390/MNA5_12
[Arabidopsis thaliana] gi|20334898|gb|AAM16205.1|
AT5g65390/MNA5_12 [Arabidopsis thaliana]
Length = 130
Score = 64.3 bits (155), Expect(2) = 4e-11
Identities = 35/91 (38%), Positives = 54/91 (58%), Gaps = 2/91 (2%)
Frame = -3
Query: 457 PVAASPRKSLSPSPAVSPSAQTPAASPPTPVESGPSPSPATVHSPPASSDAPAVTPSSIS 278
P AA+P + +P PAVSP+ P +SPP+ S PSPS + P + + P V+P ++
Sbjct: 41 PPAATPAPTTTPPPAVSPA---PTSSPPS---SAPSPSSDAPTASPPAPEGPGVSPGELA 94
Query: 277 SPPSEAQSPSPSGAALNRFSVAGS--AAVVF 191
PS+A +P P+ A N+ V GS AA+++
Sbjct: 95 PTPSDASAPPPNAALTNKAFVVGSLVAAIIY 125
Score = 37.4 bits (85), Expect = 0.11
Identities = 20/49 (40%), Positives = 26/49 (52%), Gaps = 13/49 (26%)
Frame = -3
Query: 355 PSPSPATVHSP-------------PASSDAPAVTPSSISSPPSEAQSPS 248
P+PSP T +P P ++ PAV+P+ SSPPS A SPS
Sbjct: 24 PAPSPTTTVTPPPVATPPPAATPAPTTTPPPAVSPAPTSSPPSSAPSPS 72
Score = 24.6 bits (52), Expect(2) = 4e-11
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -2
Query: 527 AFLVSSAVAHAPASAPALSPTRPPCGCFP 441
A +S +A APA +P + T PP P
Sbjct: 13 ALFTTSCLAQAPAPSPTTTVTPPPVATPP 41
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,180,466
Number of Sequences: 1393205
Number of extensions: 13689882
Number of successful extensions: 296372
Number of sequences better than 10.0: 8764
Number of HSP's better than 10.0 without gapping: 104929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215871
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
