Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001448A_C01 KMC001448A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201222.1| putative protein; protein id: At5g64170.1, supp... 59 3e-08
ref|NP_191014.1| putative protein; protein id: At3g54500.1 [Arab... 40 0.021
ref|NP_600771.1| hypothetical protein [Corynebacterium glutamicu... 33 2.5
dbj|BAB98949.1| Hypothetical protein [Corynebacterium glutamicum... 33 2.5
dbj|BAC28642.1| unnamed protein product [Mus musculus] 32 3.3
>ref|NP_201222.1| putative protein; protein id: At5g64170.1, supported by cDNA:
gi_18650603 [Arabidopsis thaliana]
Length = 566
Score = 59.3 bits (142), Expect = 3e-08
Identities = 28/46 (60%), Positives = 33/46 (70%)
Frame = -3
Query: 514 DPSRCTGFMDIEMDTNPIDRSIAHLLFHRPSEPSTLLPNHTVPSKS 377
+ + GFMDIE DTNPIDRSIAHLLFHRPS+ S N+ + KS
Sbjct: 485 EADKYAGFMDIETDTNPIDRSIAHLLFHRPSDSSLSSDNNVLSYKS 530
>ref|NP_191014.1| putative protein; protein id: At3g54500.1 [Arabidopsis thaliana]
gi|11283509|pir||T47609 hypothetical protein T14E10.70 -
Arabidopsis thaliana gi|7258353|emb|CAB77570.1| putative
protein [Arabidopsis thaliana]
Length = 649
Score = 39.7 bits (91), Expect = 0.021
Identities = 17/27 (62%), Positives = 19/27 (69%)
Frame = -3
Query: 505 RCTGFMDIEMDTNPIDRSIAHLLFHRP 425
R G D E TNP DR++AHLLFHRP
Sbjct: 541 RYAGMPDTEAVTNPTDRTVAHLLFHRP 567
>ref|NP_600771.1| hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length = 399
Score = 32.7 bits (73), Expect = 2.5
Identities = 17/54 (31%), Positives = 31/54 (56%), Gaps = 1/54 (1%)
Frame = -3
Query: 496 GFMDIEMDTNPIDRSIAHLLFHRPSE-PSTLLPNHTVPSKSSAQDTWISDQSTS 338
G+ + T+P DR++AH+ + + S+ ST + + + + A DTW S +TS
Sbjct: 168 GYFTSQPGTDPDDRNVAHVAYAKSSDNGSTWVADTVITDQVVADDTWDSRFATS 221
>dbj|BAB98949.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length = 394
Score = 32.7 bits (73), Expect = 2.5
Identities = 17/54 (31%), Positives = 31/54 (56%), Gaps = 1/54 (1%)
Frame = -3
Query: 496 GFMDIEMDTNPIDRSIAHLLFHRPSE-PSTLLPNHTVPSKSSAQDTWISDQSTS 338
G+ + T+P DR++AH+ + + S+ ST + + + + A DTW S +TS
Sbjct: 163 GYFTSQPGTDPDDRNVAHVAYAKSSDNGSTWVADTVITDQVVADDTWDSRFATS 216
>dbj|BAC28642.1| unnamed protein product [Mus musculus]
Length = 152
Score = 32.3 bits (72), Expect = 3.3
Identities = 19/45 (42%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Frame = +1
Query: 265 PPKNLLSSFYSCR-RVFQTELLLSLYWWIDH*SMYLGHWIWKVLY 396
P N L+ F C +F T LSLY WI SMY+ W W +Y
Sbjct: 84 PLCNFLAPFPFCSSELFLTVYELSLYPWIPFVSMYMYIWTWIPVY 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,619,167
Number of Sequences: 1393205
Number of extensions: 8565040
Number of successful extensions: 18970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18967
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
