Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001445A_C01 KMC001445A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_027422.1| expressed protein; protein id: At2g02180.1, sup... 186 1e-46
pir||B86280 protein T5E21.3 [imported] - Arabidopsis thaliana gi... 186 1e-46
gb|AAM61457.1| unknown [Arabidopsis thaliana] 186 1e-46
ref|NP_563953.1| expressed protein; protein id: At1g14530.1, sup... 186 1e-46
gb|AAO22624.1| unknown protein [Arabidopsis thaliana] 186 1e-46
>ref|NP_027422.1| expressed protein; protein id: At2g02180.1, supported by cDNA:
12568., supported by cDNA: gi_15425640 [Arabidopsis
thaliana] gi|15425641|dbj|BAB64308.1| TOM3 [Arabidopsis
thaliana] gi|20197487|gb|AAC97216.2| expressed protein
[Arabidopsis thaliana] gi|26449544|dbj|BAC41898.1|
unknown protein [Arabidopsis thaliana]
Length = 303
Score = 186 bits (473), Expect = 1e-46
Identities = 90/97 (92%), Positives = 93/97 (95%)
Frame = -1
Query: 559 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLVRCIMMCFNAFDKNADLDVLDHPI 380
GRLFLMLQRFPVESKGRRKKLQEVGYVTTICF CFL+RCIMMCF AFD+ A+LDVLDHPI
Sbjct: 207 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFAAFDEGANLDVLDHPI 266
Query: 379 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 269
LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH IR
Sbjct: 267 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIR 303
>pir||B86280 protein T5E21.3 [imported] - Arabidopsis thaliana
gi|7527730|gb|AAF63179.1|AC010657_15 T5E21.3
[Arabidopsis thaliana]
Length = 328
Score = 186 bits (473), Expect = 1e-46
Identities = 90/97 (92%), Positives = 93/97 (95%)
Frame = -1
Query: 559 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLVRCIMMCFNAFDKNADLDVLDHPI 380
GRLFLMLQRFPVESKGRRKKLQEVGYVTTICF CFL+RCIMMCF+AFD ADLDVLDHPI
Sbjct: 232 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPI 291
Query: 379 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 269
LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 292 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 328
>gb|AAM61457.1| unknown [Arabidopsis thaliana]
Length = 285
Score = 186 bits (473), Expect = 1e-46
Identities = 90/97 (92%), Positives = 93/97 (95%)
Frame = -1
Query: 559 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLVRCIMMCFNAFDKNADLDVLDHPI 380
GRLFLMLQRFPVESKGRRKKLQEVGYVTTICF CFL+RCIMMCF+AFD ADLDVLDHPI
Sbjct: 189 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPI 248
Query: 379 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 269
LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 249 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 285
>ref|NP_563953.1| expressed protein; protein id: At1g14530.1, supported by cDNA:
12043., supported by cDNA: gi_15706300 [Arabidopsis
thaliana] gi|15706301|dbj|BAB68339.1| THH1 [Arabidopsis
thaliana]
Length = 293
Score = 186 bits (473), Expect = 1e-46
Identities = 90/97 (92%), Positives = 93/97 (95%)
Frame = -1
Query: 559 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLVRCIMMCFNAFDKNADLDVLDHPI 380
GRLFLMLQRFPVESKGRRKKLQEVGYVTTICF CFL+RCIMMCF+AFD ADLDVLDHPI
Sbjct: 197 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPI 256
Query: 379 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 269
LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 257 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293
>gb|AAO22624.1| unknown protein [Arabidopsis thaliana]
Length = 293
Score = 186 bits (473), Expect = 1e-46
Identities = 90/97 (92%), Positives = 93/97 (95%)
Frame = -1
Query: 559 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFLCFLVRCIMMCFNAFDKNADLDVLDHPI 380
GRLFLMLQRFPVESKGRRKKLQEVGYVTTICF CFL+RCIMMCF+AFD ADLDVLDHPI
Sbjct: 197 GRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLIRCIMMCFDAFDDAADLDVLDHPI 256
Query: 379 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR 269
LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYH I+
Sbjct: 257 LNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHQIQ 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,866,210
Number of Sequences: 1393205
Number of extensions: 10495648
Number of successful extensions: 23420
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23411
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
