Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001443A_C01 KMC001443A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO12854.1| thioredoxin h [Pisum sativum] 196 3e-49
sp|Q43636|THIH_RICCO Thioredoxin H-type (TRX-H) gi|7430846|pir||... 187 8e-47
sp|P29449|THH1_TOBAC Thioredoxin H-type 1 (TRX-H1) gi|100387|pir... 184 7e-46
gb|AAL26915.1|AF323593_1 thioredoxin H [Prunus persica] 183 2e-45
emb|CAC42084.1| thioredoxin h [Pisum sativum] 181 7e-45
>gb|AAO12854.1| thioredoxin h [Pisum sativum]
Length = 113
Score = 196 bits (497), Expect = 3e-49
Identities = 95/111 (85%), Positives = 100/111 (89%)
Frame = -1
Query: 602 AEEGTVIGVHTVEAWKEHLEKGNVSKKLIVVDFTVSWCGPCRFIAPILAEIAKKLPHVVF 423
AEEG VIGVHTV+AWKE LEKG SKKLIVVDFT SWCGPCRFIAPILAEIAKKL HV F
Sbjct: 2 AEEGQVIGVHTVDAWKEQLEKGKASKKLIVVDFTASWCGPCRFIAPILAEIAKKLTHVTF 61
Query: 422 LKVDVDELKTVAEEWNVEAMPTFLFLKEGKAVDKVVGAKKEELQLTITKHA 270
LKVDVDELKTV+EEW +EAMPTFLFLK+G+ VDKVVGAKKEELQL I KHA
Sbjct: 62 LKVDVDELKTVSEEWGIEAMPTFLFLKDGELVDKVVGAKKEELQLKIDKHA 112
>sp|Q43636|THIH_RICCO Thioredoxin H-type (TRX-H) gi|7430846|pir||T10170 thioredoxin -
castor bean gi|1255954|emb|CAA94534.1| thioredoxin
[Ricinus communis]
Length = 118
Score = 187 bits (476), Expect = 8e-47
Identities = 91/118 (77%), Positives = 99/118 (83%)
Frame = -1
Query: 608 MAAEEGTVIGVHTVEAWKEHLEKGNVSKKLIVVDFTVSWCGPCRFIAPILAEIAKKLPHV 429
MAAEEG VIG HTVEAW E L+KGN +K LIVVDFT SWCGPCRFIAP LAE+AKKLP+V
Sbjct: 1 MAAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNV 60
Query: 428 VFLKVDVDELKTVAEEWNVEAMPTFLFLKEGKAVDKVVGAKKEELQLTITKHAEAPGT 255
FLKVDVDELKTVA EW VE+MPTF+FLKEGK +DKVVGAKK+ELQ TI KH T
Sbjct: 61 TFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAST 118
>sp|P29449|THH1_TOBAC Thioredoxin H-type 1 (TRX-H1) gi|100387|pir||S16590 thioredoxin h1
- common tobacco gi|20047|emb|CAA41415.1| thioredoxin
[Nicotiana tabacum]
Length = 126
Score = 184 bits (468), Expect = 7e-46
Identities = 88/120 (73%), Positives = 103/120 (85%)
Frame = -1
Query: 605 AAEEGTVIGVHTVEAWKEHLEKGNVSKKLIVVDFTVSWCGPCRFIAPILAEIAKKLPHVV 426
++EEG V G H VE W E+ +KG +KKL+VVDFT SWCGPCRFIAPILA+IAKK+PHV+
Sbjct: 8 SSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVI 67
Query: 425 FLKVDVDELKTVAEEWNVEAMPTFLFLKEGKAVDKVVGAKKEELQLTITKHAEAPGTSTA 246
FLKVDVDELKTV+ EW+VEAMPTF+F+K+GK VD+VVGAKKEELQ TI KHA AP T TA
Sbjct: 68 FLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA-APATVTA 126
>gb|AAL26915.1|AF323593_1 thioredoxin H [Prunus persica]
Length = 136
Score = 183 bits (464), Expect = 2e-45
Identities = 86/119 (72%), Positives = 98/119 (82%)
Frame = -1
Query: 602 AEEGTVIGVHTVEAWKEHLEKGNVSKKLIVVDFTVSWCGPCRFIAPILAEIAKKLPHVVF 423
AEE VIG HT +AW+E L KGN +KKL+VVDFT SWCGPCR IAPILAE+AKK P V F
Sbjct: 2 AEENQVIGCHTTQAWEEQLHKGNENKKLVVVDFTASWCGPCRLIAPILAELAKKTPEVTF 61
Query: 422 LKVDVDELKTVAEEWNVEAMPTFLFLKEGKAVDKVVGAKKEELQLTITKHAEAPGTSTA 246
LKVDVDEL+TV+EEW VEAMPTFLFLKEGK VDKVVGAKK+ELQ+ + KH A ++A
Sbjct: 62 LKVDVDELRTVSEEWGVEAMPTFLFLKEGKIVDKVVGAKKDELQIKVAKHVAAAAAASA 120
>emb|CAC42084.1| thioredoxin h [Pisum sativum]
Length = 118
Score = 181 bits (459), Expect = 7e-45
Identities = 87/117 (74%), Positives = 98/117 (83%)
Frame = -1
Query: 602 AEEGTVIGVHTVEAWKEHLEKGNVSKKLIVVDFTVSWCGPCRFIAPILAEIAKKLPHVVF 423
A E VI VH+ E+WKE ++KG SKKLIVVDFT SWCGPCRFIAPILAEIAKK P V+F
Sbjct: 2 AAENEVIAVHSDESWKEQIQKGTESKKLIVVDFTASWCGPCRFIAPILAEIAKKTPQVIF 61
Query: 422 LKVDVDELKTVAEEWNVEAMPTFLFLKEGKAVDKVVGAKKEELQLTITKHAEAPGTS 252
LKVD+DEL++VAEEW++EAMPTFL LKEG VDKVVGAKKEELQL ITKHA T+
Sbjct: 62 LKVDIDELESVAEEWSIEAMPTFLLLKEGMEVDKVVGAKKEELQLAITKHATTVATA 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,765,095
Number of Sequences: 1393205
Number of extensions: 13234814
Number of successful extensions: 48764
Number of sequences better than 10.0: 1113
Number of HSP's better than 10.0 without gapping: 44782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47993
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
