Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001441A_C01 KMC001441A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA65585.1| arginine decarboxylase [Vitis vinifera] 190 2e-47
sp|Q39827|SPE1_SOYBN ARGININE DECARBOXYLASE (ARGDC) (ADC) gi|743... 187 1e-46
gb|AAF26435.1| arginine decarboxylase [Brassica juncea] 170 1e-41
emb|CAB64599.1| arginine decarboxylase 1 [Datura stramonium] 168 5e-41
pir||T10709 arginine decarboxylase (EC 4.1.1.19) ADC8 - clove pi... 167 1e-40
>emb|CAA65585.1| arginine decarboxylase [Vitis vinifera]
Length = 630
Score = 190 bits (482), Expect = 2e-47
Identities = 102/160 (63%), Positives = 111/160 (68%), Gaps = 29/160 (18%)
Frame = -2
Query: 643 LAMHELEGGR-------KYYLGMFLGGAYEEALGGYHNLFGGPSVVRVLQSEGPHSFAVT 485
L +HELEG KYYLGMFLGGAYEEALGG HNLFGGPSVVRVLQS+GPHSFAVT
Sbjct: 473 LPLHELEGSDVVFGGSGKYYLGMFLGGAYEEALGGLHNLFGGPSVVRVLQSDGPHSFAVT 532
Query: 484 RAMPGPSNGDVLRVMQHQPELMFETLKHRAEESVHDDELTAAALATALARSFHNMPYLV- 308
RAMPGPS GDVLRVMQH+PELMFETLKHRAEE H+D +T +LA+ LA SFH MPYLV
Sbjct: 533 RAMPGPSCGDVLRVMQHEPELMFETLKHRAEECGHEDGMTNGSLASGLALSFHKMPYLVA 592
Query: 307 ---------------------TAADHAGEDEHDQWSYCIA 251
A AG+D+H WSYC A
Sbjct: 593 GSSCCMTNSGYYYGNEDNYSRVADSAAGDDDH--WSYCFA 630
>sp|Q39827|SPE1_SOYBN ARGININE DECARBOXYLASE (ARGDC) (ADC) gi|7436498|pir||T06593
arginine decarboxylase (EC 4.1.1.19) - soybean
gi|1163181|gb|AAD09204.1| arginine decarboxylase
[Glycine max]
Length = 692
Score = 187 bits (475), Expect = 1e-46
Identities = 98/138 (71%), Positives = 106/138 (76%), Gaps = 10/138 (7%)
Frame = -2
Query: 643 LAMHELEGGRKYYLGMFLGGAYEEALGGYHNLFGGPSVVRVLQSEGPHSFAVTRAMPGPS 464
L +HE+EGGR YYLGMFLGGAYEEALGG HNLFGGPSVVRV QS+GPHSFAVTRA+PGPS
Sbjct: 556 LPLHEMEGGRTYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPS 615
Query: 463 NGDVLRVMQHQPELMFETLKHRAEESVHDDELTAAALATALARSFHNMPYL--------- 311
GDVLRVMQHQPELMFETLKHRA+E V D AA LA LAR+F MPYL
Sbjct: 616 CGDVLRVMQHQPELMFETLKHRAQEYVSHDN-AAALLAAGLARTFDRMPYLLSLSSFVAD 674
Query: 310 -VTAADHAGEDEHDQWSY 260
V AA A +D +QWSY
Sbjct: 675 DVAAAVPAAQDLGEQWSY 692
>gb|AAF26435.1| arginine decarboxylase [Brassica juncea]
Length = 680
Score = 170 bits (431), Expect = 1e-41
Identities = 87/122 (71%), Positives = 97/122 (79%), Gaps = 9/122 (7%)
Frame = -2
Query: 643 LAMHELE-GGRKYYLGMFLGGAYEEALGGYHNLFGGPSVVRVLQSEGPHSFAVTRAMPGP 467
L +HELE GG +Y+LGMFLGGAYEEALGG HNLFGGPSVVRVLQS+GPHSFAVTRA+PG
Sbjct: 532 LPLHELESGGGRYFLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAVPGQ 591
Query: 466 SNGDVLRVMQHQPELMFETLKHRAEESVH--------DDELTAAALATALARSFHNMPYL 311
S+ DVLR MQH+PE+MFETLKHRAEE +H DDE +A L RSFHNMPYL
Sbjct: 592 SSADVLRGMQHEPEMMFETLKHRAEEVMHRKGGEGEDDDEGEFCNVAACLDRSFHNMPYL 651
Query: 310 VT 305
T
Sbjct: 652 AT 653
>emb|CAB64599.1| arginine decarboxylase 1 [Datura stramonium]
Length = 724
Score = 168 bits (426), Expect = 5e-41
Identities = 98/163 (60%), Positives = 112/163 (68%), Gaps = 32/163 (19%)
Frame = -2
Query: 643 LAMHEL--EGGRKYYLGMFLGGAYEEALGGYHNLFGGPSVVRVLQSEGPHSFAVTRAMPG 470
L +HEL +GGR YYLGMFLGGAYEEALGG HNLFGGPSVVRVLQS+ PHSFAVTR++PG
Sbjct: 565 LPLHELGSDGGR-YYLGMFLGGAYEEALGGLHNLFGGPSVVRVLQSDSPHSFAVTRSVPG 623
Query: 469 PSNGDVLRVMQHQPELMFETLKHRAEESVHDDE------LTAAALATALARSFHNMPYLV 308
PS DVLR MQ +PELMFETLKHRAEE + +E ++ A+L ++LA+SFHNMPYLV
Sbjct: 624 PSCADVLRAMQFEPELMFETLKHRAEEYLEQEEKEEDKSMSFASLTSSLAQSFHNMPYLV 683
Query: 307 T-----------------------AADHA-GEDEHDQWSYCIA 251
AAD A GED D WSYC A
Sbjct: 684 APSSCCFTAATGNNGGYYYYSEDKAADCATGED--DIWSYCTA 724
>pir||T10709 arginine decarboxylase (EC 4.1.1.19) ADC8 - clove pink
gi|2183223|gb|AAB60880.1| arginine decarboxylase
[Dianthus caryophyllus]
Length = 725
Score = 167 bits (422), Expect = 1e-40
Identities = 82/112 (73%), Positives = 94/112 (83%)
Frame = -2
Query: 643 LAMHELEGGRKYYLGMFLGGAYEEALGGYHNLFGGPSVVRVLQSEGPHSFAVTRAMPGPS 464
L +HEL GG YYLGMFLGGAYEEALGG HNLFGGPSVVRV QS+GP S+AVTRA+PGPS
Sbjct: 565 LPLHELSGGEGYYLGMFLGGAYEEALGGVHNLFGGPSVVRVQQSDGPQSYAVTRAVPGPS 624
Query: 463 NGDVLRVMQHQPELMFETLKHRAEESVHDDELTAAALATALARSFHNMPYLV 308
+ DVLRVM H+PELMF+TLKHRAEE D++ TA LA LA+SF++ PYLV
Sbjct: 625 SSDVLRVMHHEPELMFQTLKHRAEEC--DNDYTAGPLADMLAQSFNSTPYLV 674
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,359,499
Number of Sequences: 1393205
Number of extensions: 12776882
Number of successful extensions: 38604
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 36794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38534
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
