Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001440A_C01 KMC001440A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB92281.1| P0421H07.9 [Oryza sativa (japonica cultivar-group)] 32 0.17
gb|AAK62624.1| AT3g49400/F2K15_260 [Arabidopsis thaliana] 36 0.29
gb|AAG52177.1|AC012329_4 hypothetical protein; 45165-40041 [Arab... 36 0.29
ref|NP_009464.1| related to the neuronal gamma -aminobuty... 33 2.5
dbj|BAB09387.1| FRO1 and FRO2-like protein [Arabidopsis thaliana] 32 4.2
>dbj|BAB92281.1| P0421H07.9 [Oryza sativa (japonica cultivar-group)]
Length = 974
Score = 31.6 bits (70), Expect(2) = 0.17
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = -1
Query: 276 MWIEIILTSEREL*ERLVDFSFSAFQN 196
+W +++ SEREL ERLV F+F+A N
Sbjct: 770 LWNNLLVRSERELQERLVAFTFAAVLN 796
Score = 24.3 bits (51), Expect(2) = 0.17
Identities = 11/19 (57%), Positives = 16/19 (83%)
Frame = -2
Query: 425 VLS*RLNLLNIICRCVVLA 369
V S +L+LLNI+CR V+L+
Sbjct: 733 VSSRKLHLLNIVCRKVMLS 751
>gb|AAK62624.1| AT3g49400/F2K15_260 [Arabidopsis thaliana]
Length = 793
Score = 36.2 bits (82), Expect = 0.29
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -1
Query: 291 ENQFTMWIEIILTSEREL*ERLVDFSFSAFQNSMSS 184
E + +W++++ SEREL ERLV SFSA+ + SS
Sbjct: 676 EGEIDLWLKLLQESERELRERLVGLSFSAYLLAESS 711
>gb|AAG52177.1|AC012329_4 hypothetical protein; 45165-40041 [Arabidopsis thaliana]
Length = 798
Score = 36.2 bits (82), Expect = 0.29
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = -1
Query: 291 ENQFTMWIEIILTSEREL*ERLVDFSFSAFQNSMSS 184
E + +W++++ SEREL ERLV SFSA+ + SS
Sbjct: 582 EGEIDLWLKLLQESERELRERLVGLSFSAYLLAESS 617
>ref|NP_009464.1| related to the neuronal gamma -aminobutyric acid-glycine
vesicular transporters; Avt5p
[Saccharomyces cerevisiae]
gi|586448|sp|P38176|YBI9_YEAST HYPOTHETICAL 57.1 KD
PROTEIN IN MAP2-TEL1 INTERGENIC REGION
gi|626194|pir||S45413 probable membrane protein YBL089w
- yeast (Saccharomyces cerevisiae)
gi|496686|emb|CAA56013.1| A-509 protein [Saccharomyces
cerevisiae] gi|536146|emb|CAA84910.1| ORF YBL089w
[Saccharomyces cerevisiae]
Length = 509
Score = 33.1 bits (74), Expect = 2.5
Identities = 20/54 (37%), Positives = 27/54 (49%)
Frame = -2
Query: 533 GMLEDNMSMESLLEATNMKEFGPFEGKFNWNSEEPNVLS*RLNLLNIICRCVVL 372
G L DN + S + N P E N+EEPN+ S L +NII C++L
Sbjct: 370 GKLYDNRA--SFIPLDNFNSEDPQEAPTQQNNEEPNLRSESLRHINIITLCILL 421
>dbj|BAB09387.1| FRO1 and FRO2-like protein [Arabidopsis thaliana]
Length = 713
Score = 32.3 bits (72), Expect = 4.2
Identities = 26/93 (27%), Positives = 42/93 (44%)
Frame = +1
Query: 217 KIHKPFSKLSFTG*NNFYPHSKLVFNGRA*PFQVLNHST*LFQSFVQHQSFANTTHLQII 396
++ F+ +F N P + ++FN P LN +F + + S TT LQ
Sbjct: 455 RVQLVFAVRTFQDLNMLLPIASIIFN----PIYNLNLKLKVFVTQEKKPSNGTTT-LQEF 509
Query: 397 LSKFSRQERTFGSSEFQLNFPSNGPNSFMFVAS 495
L++ Q G+ E FP GP SF ++A+
Sbjct: 510 LAQSQVQSIHLGTDEDYSRFPIRGPESFRWLAT 542
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,289,314
Number of Sequences: 1393205
Number of extensions: 9172233
Number of successful extensions: 31685
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 31372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31685
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
