Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001439A_C01 KMC001439A_c01
(401 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173799.1| trehalose 6-phosphate synthase, putative; prote... 133 6e-31
ref|NP_176221.1| trehalose-6-phosphate synthase, putative; prote... 128 2e-29
ref|NP_177186.1| trehalose-6-phosphate synthase, putative; prote... 97 4e-20
ref|NP_172129.1| trehalose-6-phosphate synthase, putative; prote... 86 1e-16
gb|AAL91978.1|AF483209_1 putative trehalose synthase [Solanum tu... 84 5e-16
>ref|NP_173799.1| trehalose 6-phosphate synthase, putative; protein id: At1g23870.1,
supported by cDNA: gi_18176366, supported by cDNA:
gi_20465286 [Arabidopsis thaliana]
gi|9369388|gb|AAF87136.1|AC002423_1 T23E23.3
[Arabidopsis thaliana] gi|18176367|gb|AAL60031.1|
putative trehalose 6-phosphate synthase [Arabidopsis
thaliana] gi|20465287|gb|AAM20007.1| putative trehalose
6-phosphate synthase [Arabidopsis thaliana]
Length = 867
Score = 133 bits (334), Expect = 6e-31
Identities = 72/104 (69%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Frame = +2
Query: 92 MASRSYANLLDLGG-GFLDSPRTARAIPRTMTVPGVISDLDANGRCDGDSDVSSSGY-RE 265
M SRS AN LDL LD P+T RA+PR MTVPG+IS+LD G DG SDV+SS RE
Sbjct: 1 MVSRSCANFLDLASWDLLDFPQTQRALPRVMTVPGIISELDG-GYSDGSSDVNSSNSSRE 59
Query: 266 RKIIVANMLPLQAKRDIETGKWCFNLDKDSILWQLKDGFSSDTE 397
RKIIVANMLPLQAKRD ETG+WCF+ D+DS+L QL+DGFSSDTE
Sbjct: 60 RKIIVANMLPLQAKRDTETGQWCFSWDEDSLLLQLRDGFSSDTE 103
>ref|NP_176221.1| trehalose-6-phosphate synthase, putative; protein id: At1g60140.1
[Arabidopsis thaliana] gi|7488402|pir||T02267
trehalose-6-phosphate synthase homolog T13D8.4 -
Arabidopsis thaliana gi|3249064|gb|AAC24048.1| Strong
similarity to trehalose-6-phosphate synthase homolog
gb|2245136 from A. thaliana chromosome 4 contig
gb|Z97344. [Arabidopsis thaliana]
gi|27462090|gb|AAO15312.1| trehalose-6-phosphate
synthase 3 [Arabidopsis thaliana]
Length = 861
Score = 128 bits (321), Expect = 2e-29
Identities = 67/104 (64%), Positives = 76/104 (72%), Gaps = 1/104 (0%)
Frame = +2
Query: 92 MASRSYANLLDLGGG-FLDSPRTARAIPRTMTVPGVISDLDANGRCDGDSDVSSSGYRER 268
M S+S+ NLLDL G LD P+T R +PR MTVPG+ISD+D G DGDSDV S RER
Sbjct: 1 MGSKSFGNLLDLASGDLLDIPQTPRYLPRVMTVPGIISDVDGYGISDGDSDVISLPCRER 60
Query: 269 KIIVANMLPLQAKRDIETGKWCFNLDKDSILWQLKDGFSSDTEV 400
KIIVAN LPL K+D ETGKW F+LD DS L LKDGFS +TEV
Sbjct: 61 KIIVANFLPLNGKKDSETGKWKFSLDNDSPLLHLKDGFSPETEV 104
>ref|NP_177186.1| trehalose-6-phosphate synthase, putative; protein id: At1g70290.1
[Arabidopsis thaliana] gi|7488401|pir||T01494
trehalose-6-phosphate synthase homolog F17O7.18 -
Arabidopsis thaliana gi|3176687|gb|AAC18810.1| Strong
similarity to trehalose-6-phosphate synthase homolog
from A. thaliana chromosome 4 contig gb|Z97344. ESTs
gb|H37594, gb|R65023, gb|H37578 and gb|R64855 come from
this gene. [Arabidopsis thaliana]
gi|27462088|gb|AAO15311.1| trehalose-6-phosphate
synthase 2 [Arabidopsis thaliana]
Length = 826
Score = 97.4 bits (241), Expect = 4e-20
Identities = 48/73 (65%), Positives = 59/73 (80%)
Frame = +2
Query: 179 MTVPGVISDLDANGRCDGDSDVSSSGYRERKIIVANMLPLQAKRDIETGKWCFNLDKDSI 358
MTVPG+I+D+D + + S +S G RERKIIVANMLPLQ+KRD ETGKWCFN D+DS+
Sbjct: 1 MTVPGIITDVDGDTTSEVTS--TSGGSRERKIIVANMLPLQSKRDAETGKWCFNWDEDSL 58
Query: 359 LWQLKDGFSSDTE 397
QL+DGFSS+TE
Sbjct: 59 QLQLRDGFSSETE 71
>ref|NP_172129.1| trehalose-6-phosphate synthase, putative; protein id: At1g06410.1
[Arabidopsis thaliana] gi|25347117|pir||A86200
hypothetical protein [imported] - Arabidopsis thaliana
gi|8927678|gb|AAF82169.1|AC068143_11 Contains similarity
to a trehalose-6-phosphate synthase mRNA from
Arabidopsis thaliana gb|Y08568 and contains a
trehalose-6-phosphate synthase PF|00982 domain. ESTs
gb|T76758, gb|T21695, gb|R30506, gb|T42298, gb|T42288
come from this gene
Length = 851
Score = 85.9 bits (211), Expect = 1e-16
Identities = 50/104 (48%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Frame = +2
Query: 92 MASRSYANLLDLGGG-FLDSPRTARAIPRTMTVPGVISDLDANGRCDGDSDVSSSGYRER 268
M SRSY NLLDL G F R R +PR MTVPG +S+ D + SD SS +R
Sbjct: 1 MISRSYTNLLDLASGNFPVMGRERRRLPRVMTVPGNVSEFDEDQAYSVSSDNPSSVSSDR 60
Query: 269 KIIVANMLPLQAKRDIETGKWCFNLDKDSILWQLKDGFSSDTEV 400
IIVAN LPL+A++ G W F+ D+DS+ QLKDG D E+
Sbjct: 61 MIIVANRLPLKAEK--RNGSWSFSWDQDSLYLQLKDGLPEDMEI 102
>gb|AAL91978.1|AF483209_1 putative trehalose synthase [Solanum tuberosum]
Length = 857
Score = 83.6 bits (205), Expect = 5e-16
Identities = 49/106 (46%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +2
Query: 92 MASRSYANLLDLGGG---FLDSPRTARAIPRTMTVPGVISDLDANGRCDGDSDVSSSGYR 262
M SRSY NLLDL G + R R + R MTVPG I +LD + SD SS
Sbjct: 1 MMSRSYTNLLDLASGNFPVMGRERDRRRMSRVMTVPGSICELDDDQAVSVSSDNQSSLAG 60
Query: 263 ERKIIVANMLPLQAKRDIETGKWCFNLDKDSILWQLKDGFSSDTEV 400
+R I+VAN LPL+AKR + W F+ ++DS+L +LKDG D EV
Sbjct: 61 DRMIVVANQLPLKAKRRPDNKGWSFSWNEDSLLLRLKDGLPEDMEV 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,210,353
Number of Sequences: 1393205
Number of extensions: 7725550
Number of successful extensions: 19158
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 18726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19136
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
