Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001437A_C01 KMC001437A_c01
(763 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01818 hypothetical protein T27D20.10 - Arabidopsis thalian... 94 7e-36
ref|NP_567262.1| putative membrane trafficking factor; protein i... 94 7e-36
ref|NP_193946.1| putative protein; protein id: At4g22150.1 [Arab... 94 2e-34
emb|CAD41033.1| OSJNBa0060P14.4 [Oryza sativa (japonica cultivar... 93 4e-33
gb|AAK92701.1| putative phosphatase [Arabidopsis thaliana] 107 1e-22
>pir||T01818 hypothetical protein T27D20.10 - Arabidopsis thaliana
gi|3377843|gb|AAC28225.1| contains similarity to rat p47
protein (GB:AB002086) [Arabidopsis thaliana]
gi|7267177|emb|CAB77889.1| putative membrane trafficking
factor [Arabidopsis thaliana]
Length = 308
Score = 94.0 bits (232), Expect(2) = 7e-36
Identities = 49/91 (53%), Positives = 63/91 (68%), Gaps = 2/91 (2%)
Frame = -3
Query: 758 VNVNLIRRNEKYHEPEKPHVPFQGVGRTLGSSS-ASVAPQPTA-SSTSTSFNTSPTPSAG 585
V+VNL+R+ EK E +K V FQGVGRTLG S+ S + P A S T P PS
Sbjct: 166 VHVNLMRKEEKCPERQKRRVSFQGVGRTLGGSNEGSGSSSPVAPDSAPIPIQTEPAPSQS 225
Query: 584 LVVDQSLPSTQIQLRLADGTRLISNFNYHHT 492
LV+D+++P+T IQLRLADGTRL++ FN+HHT
Sbjct: 226 LVIDETVPTTSIQLRLADGTRLVAKFNHHHT 256
Score = 79.3 bits (194), Expect(2) = 7e-36
Identities = 38/52 (73%), Positives = 45/52 (86%)
Frame = -1
Query: 490 LSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 335
++DIR FID+SRP + NYQLQ MGFPPK L+D TQTIE+AGLANSVV+QKF
Sbjct: 257 VNDIRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLANSVVLQKF 308
>ref|NP_567262.1| putative membrane trafficking factor; protein id: At4g04210.1,
supported by cDNA: 1463., supported by cDNA: gi_20268691
[Arabidopsis thaliana] gi|20268692|gb|AAM14050.1|
putative membrane trafficking factor [Arabidopsis
thaliana] gi|21553471|gb|AAM62564.1| putative membrane
trafficking factor [Arabidopsis thaliana]
gi|21689865|gb|AAM67493.1| putative membrane trafficking
factor [Arabidopsis thaliana]
Length = 303
Score = 94.0 bits (232), Expect(2) = 7e-36
Identities = 49/91 (53%), Positives = 63/91 (68%), Gaps = 2/91 (2%)
Frame = -3
Query: 758 VNVNLIRRNEKYHEPEKPHVPFQGVGRTLGSSS-ASVAPQPTA-SSTSTSFNTSPTPSAG 585
V+VNL+R+ EK E +K V FQGVGRTLG S+ S + P A S T P PS
Sbjct: 161 VHVNLMRKEEKCPERQKRRVSFQGVGRTLGGSNEGSGSSSPVAPDSAPIPIQTEPAPSQS 220
Query: 584 LVVDQSLPSTQIQLRLADGTRLISNFNYHHT 492
LV+D+++P+T IQLRLADGTRL++ FN+HHT
Sbjct: 221 LVIDETVPTTSIQLRLADGTRLVAKFNHHHT 251
Score = 79.3 bits (194), Expect(2) = 7e-36
Identities = 38/52 (73%), Positives = 45/52 (86%)
Frame = -1
Query: 490 LSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 335
++DIR FID+SRP + NYQLQ MGFPPK L+D TQTIE+AGLANSVV+QKF
Sbjct: 252 VNDIRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLANSVVLQKF 303
>ref|NP_193946.1| putative protein; protein id: At4g22150.1 [Arabidopsis thaliana]
gi|25407583|pir||D85253 hypothetical protein AT4g22150
[imported] - Arabidopsis thaliana
gi|5804817|emb|CAB52871.1| putative protein [Arabidopsis
thaliana] gi|7269060|emb|CAB79170.1| putative protein
[Arabidopsis thaliana]
Length = 302
Score = 93.6 bits (231), Expect(2) = 2e-34
Identities = 50/89 (56%), Positives = 63/89 (70%)
Frame = -3
Query: 758 VNVNLIRRNEKYHEPEKPHVPFQGVGRTLGSSSASVAPQPTASSTSTSFNTSPTPSAGLV 579
V+VNL+RR+EK E EK V FQGVGRTLG +S+S A ++ S T +P LV
Sbjct: 165 VHVNLMRRDEKCPEKEKLKVSFQGVGRTLGGASSSTA---SSQSNLTDVAAVQSPLQSLV 221
Query: 578 VDQSLPSTQIQLRLADGTRLISNFNYHHT 492
VD++LPST IQLRLADGTR+++ FN HHT
Sbjct: 222 VDETLPSTSIQLRLADGTRMVAKFNNHHT 250
Score = 75.1 bits (183), Expect(2) = 2e-34
Identities = 36/52 (69%), Positives = 43/52 (82%)
Frame = -1
Query: 490 LSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 335
++DIR FI+ SRP NY LQ+MGFPPK L+D +QTIEQAGLA+SVVIQKF
Sbjct: 251 VNDIRGFIEFSRPGNPNNYTLQVMGFPPKPLTDPSQTIEQAGLASSVVIQKF 302
>emb|CAD41033.1| OSJNBa0060P14.4 [Oryza sativa (japonica cultivar-group)]
Length = 376
Score = 92.8 bits (229), Expect(2) = 4e-33
Identities = 48/89 (53%), Positives = 59/89 (65%)
Frame = -3
Query: 758 VNVNLIRRNEKYHEPEKPHVPFQGVGRTLGSSSASVAPQPTASSTSTSFNTSPTPSAGLV 579
V+VN+I+R E Y P +P PFQGVGRTLG S++ Q A +T P S G+V
Sbjct: 242 VHVNVIKRLEDYQAPLRPPSPFQGVGRTLGGGSSAEESQAPAPATQ-----EPRRSVGIV 296
Query: 578 VDQSLPSTQIQLRLADGTRLISNFNYHHT 492
VD SLP T IQLRLADGTR+++ FN HHT
Sbjct: 297 VDDSLPFTSIQLRLADGTRMVARFNMHHT 325
Score = 71.2 bits (173), Expect(2) = 4e-33
Identities = 36/51 (70%), Positives = 41/51 (79%)
Frame = -1
Query: 490 LSDIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQK 338
+ DIR+FIDASRP R YQLQ GFPPK L+D QT+EQAGLANSV+IQK
Sbjct: 326 VGDIRSFIDASRPGATRPYQLQT-GFPPKQLADPAQTVEQAGLANSVIIQK 375
>gb|AAK92701.1| putative phosphatase [Arabidopsis thaliana]
Length = 421
Score = 107 bits (268), Expect = 1e-22
Identities = 60/118 (50%), Positives = 72/118 (60%)
Frame = -3
Query: 758 VNVNLIRRNEKYHEPEKPHVPFQGVGRTLGSSSASVAPQPTASSTSTSFNTSPTPSAGLV 579
V+V+L+RR E + EP KP PFQGVGRTLG+S + + P ASS N +P PS GLV
Sbjct: 283 VHVDLVRRGENFTEPPKPKNPFQGVGRTLGASGSGSSSAPQASSAP--MNVAPAPSRGLV 340
Query: 578 VDQSLPSTQIQLRLADGTRLISNFNYHHTAQRHSCLH*CF*T*GCKELSTSDNGFSPK 405
VD + P+T IQLRLADGTRL+S FN HHT + G KE GF PK
Sbjct: 341 VDPAAPTTSIQLRLADGTRLVSRFNNHHTVRDVRGFIDASRPGGSKEYQLLTMGFPPK 398
Score = 74.7 bits (182), Expect = 1e-12
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -1
Query: 484 DIRAFIDASRPEGARNYQLQIMGFPPKLLSDETQTIEQAGLANSVVIQKF 335
D+R FIDASRP G++ YQL MGFPPK L++ QTIEQAG+AN+VVIQKF
Sbjct: 372 DVRGFIDASRPGGSKEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQKF 421
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,858,228
Number of Sequences: 1393205
Number of extensions: 14025409
Number of successful extensions: 44440
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 38235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43929
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
