Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001428A_C01 KMC001428A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566213.1| leucine-rich repeat transmembrane protein kinas... 124 7e-28
gb|AAF00640.1|AC009540_17 hypothetical protein [Arabidopsis thal... 124 7e-28
dbj|BAC07439.1| P0039H02.32 [Oryza sativa (japonica cultivar-gro... 112 3e-24
dbj|BAC07387.2| OJ1641_C04.20 [Oryza sativa (japonica cultivar-g... 112 3e-24
gb|AAO38000.1| putative receptor-like protein kinase [Oryza sati... 103 2e-21
>ref|NP_566213.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g03770.1, supported by cDNA: 116488. [Arabidopsis
thaliana] gi|21536973|gb|AAM61314.1| unknown
[Arabidopsis thaliana]
Length = 802
Score = 124 bits (311), Expect = 7e-28
Identities = 60/106 (56%), Positives = 79/106 (73%), Gaps = 2/106 (1%)
Frame = -3
Query: 519 IILGRPIMFHNEVGTLKDLLQVSIQTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLS 340
+I+GRP+ ++V LK+ LQ SI DD ARRS+VDP VH+ CSD+SL TMMEICVRCL
Sbjct: 673 LIVGRPLRAKSQVDVLKEQLQASISADDGARRSMVDPTVHRACSDQSLKTMMEICVRCLL 732
Query: 339 SEPTVRPSVEDVLWNLQFAAQVQNTWKRDSN--DHRYSPVPSSTEI 208
+P RPS+EDVLWNLQFA+QVQ W ++SN + SP P+++ +
Sbjct: 733 KDPLERPSIEDVLWNLQFASQVQEGWLQNSNPSSNLGSPSPAASSL 778
>gb|AAF00640.1|AC009540_17 hypothetical protein [Arabidopsis thaliana]
Length = 803
Score = 124 bits (311), Expect = 7e-28
Identities = 60/106 (56%), Positives = 79/106 (73%), Gaps = 2/106 (1%)
Frame = -3
Query: 519 IILGRPIMFHNEVGTLKDLLQVSIQTDDIARRSIVDPAVHKECSDESLMTMMEICVRCLS 340
+I+GRP+ ++V LK+ LQ SI DD ARRS+VDP VH+ CSD+SL TMMEICVRCL
Sbjct: 673 LIVGRPLRAKSQVDVLKEQLQASISADDGARRSMVDPTVHRACSDQSLKTMMEICVRCLL 732
Query: 339 SEPTVRPSVEDVLWNLQFAAQVQNTWKRDSN--DHRYSPVPSSTEI 208
+P RPS+EDVLWNLQFA+QVQ W ++SN + SP P+++ +
Sbjct: 733 KDPLERPSIEDVLWNLQFASQVQEGWLQNSNPSSNLGSPSPAASSL 778
>dbj|BAC07439.1| P0039H02.32 [Oryza sativa (japonica cultivar-group)]
Length = 797
Score = 112 bits (279), Expect = 3e-24
Identities = 61/110 (55%), Positives = 74/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 519 IILGRPIMFHNEVGTLKDLLQVSIQTDDIA-RRSIVDPAVHKECSDESLMTMMEICVRCL 343
+I GRPI EV +K+ LQ ++ + A RRS VDPAV K CSDES+ T+MEIC+RCL
Sbjct: 686 VISGRPITSIYEVEIMKEQLQSALTAEGTAKRRSFVDPAVSKGCSDESVKTVMEICLRCL 745
Query: 342 SSEPTVRPSVEDVLWNLQFAAQVQNTWKRDSNDHRYSPV-PSSTEIDHRD 196
+ E RPSVEDVLWNLQFAAQVQ+ W+ DS SP+ PS D D
Sbjct: 746 AKEAVQRPSVEDVLWNLQFAAQVQDDWRGDSRSSEESPLSPSQIPRDLED 795
>dbj|BAC07387.2| OJ1641_C04.20 [Oryza sativa (japonica cultivar-group)]
Length = 794
Score = 112 bits (279), Expect = 3e-24
Identities = 61/110 (55%), Positives = 74/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 519 IILGRPIMFHNEVGTLKDLLQVSIQTDDIA-RRSIVDPAVHKECSDESLMTMMEICVRCL 343
+I GRPI EV +K+ LQ ++ + A RRS VDPAV K CSDES+ T+MEIC+RCL
Sbjct: 683 VISGRPITSIYEVEIMKEQLQSALTAEGTAKRRSFVDPAVSKGCSDESVKTVMEICLRCL 742
Query: 342 SSEPTVRPSVEDVLWNLQFAAQVQNTWKRDSNDHRYSPV-PSSTEIDHRD 196
+ E RPSVEDVLWNLQFAAQVQ+ W+ DS SP+ PS D D
Sbjct: 743 AKEAVQRPSVEDVLWNLQFAAQVQDDWRGDSRSSEESPLSPSQIPRDLED 792
>gb|AAO38000.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 833
Score = 103 bits (256), Expect = 2e-21
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = -3
Query: 519 IILGRPIMFHNEVGTLKDLLQVSIQTDDIARR-SIVDPAVHKECSDESLMTMMEICVRCL 343
I+ G+PI EV +K+L+ ++ +D+ RR S D V K CSDESL T+M+IC+RCL
Sbjct: 678 IVSGKPITSLYEVEIMKELMLWAVADEDLVRRRSFADQEVSKGCSDESLRTIMQICLRCL 737
Query: 342 SSEPTVRPSVEDVLWNLQFAAQVQNTWKRDSNDHRYSPVPSSTEI 208
+ E RPS+EDVLWNLQFAAQVQ+ W+ D+ S V SS+ I
Sbjct: 738 AKEAVQRPSIEDVLWNLQFAAQVQDDWEGDNRSSDGSMVSSSSRI 782
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,542,313
Number of Sequences: 1393205
Number of extensions: 9212229
Number of successful extensions: 21181
Number of sequences better than 10.0: 238
Number of HSP's better than 10.0 without gapping: 20598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21142
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
