Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001426A_C01 KMC001426A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63883.1| unknown [Arabidopsis thaliana] 35 0.94
ref|NP_198824.1| putative protein; protein id: At5g40080.1 [Arab... 35 0.94
dbj|BAB11384.1| gene_id:MKM21.12~ref|NP_009841.1~similar to unkn... 34 1.2
ref|NP_568574.1| expressed protein; protein id: At5g39800.1, sup... 34 1.2
ref|NP_504965.1| Predicted CDS, putative protein family member, ... 32 4.7
>gb|AAM63883.1| unknown [Arabidopsis thaliana]
Length = 94
Score = 34.7 bits (78), Expect = 0.94
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -1
Query: 325 QLKPYVSQCPREVNTSEDSQTT 260
+LKPYVSQCP +VNT+E ++ +
Sbjct: 72 KLKPYVSQCPLQVNTNESTEAS 93
>ref|NP_198824.1| putative protein; protein id: At5g40080.1 [Arabidopsis thaliana]
gi|8843807|dbj|BAA97355.1|
gene_id:MUD12.5~ref|NP_009841.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 94
Score = 34.7 bits (78), Expect = 0.94
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -1
Query: 325 QLKPYVSQCPREVNTSEDSQTT 260
+LKPYVSQCP +VNT+E ++ +
Sbjct: 72 KLKPYVSQCPLQVNTNESTEAS 93
>dbj|BAB11384.1| gene_id:MKM21.12~ref|NP_009841.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 86
Score = 34.3 bits (77), Expect = 1.2
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -1
Query: 325 QLKPYVSQCPREVNTSEDSQTT 260
+LKPYVSQCP +VNT+E ++ +
Sbjct: 64 KLKPYVSQCPIQVNTNESTEAS 85
>ref|NP_568574.1| expressed protein; protein id: At5g39800.1, supported by cDNA:
2842. [Arabidopsis thaliana] gi|26451185|dbj|BAC42696.1|
unknown protein [Arabidopsis thaliana]
gi|28973095|gb|AAO63872.1| unknown protein [Arabidopsis
thaliana]
Length = 94
Score = 34.3 bits (77), Expect = 1.2
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -1
Query: 325 QLKPYVSQCPREVNTSEDSQTT 260
+LKPYVSQCP +VNT+E ++ +
Sbjct: 72 KLKPYVSQCPIQVNTNESTEAS 93
>ref|NP_504965.1| Predicted CDS, putative protein family member, nematode specific
[Caenorhabditis elegans] gi|7497751|pir||T29678
hypothetical protein C50E3.3 - Caenorhabditis elegans
gi|1458344|gb|AAB04887.1| Hypothetical protein C50E3.3
[Caenorhabditis elegans]
Length = 128
Score = 32.3 bits (72), Expect = 4.7
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 454 IFIETNPCPLNGTVQCVMVRLGTMTPLHHHLTM 552
+F E P NGT +C+++R+G ++ H+H T+
Sbjct: 64 LFSEGEPNNKNGTQKCIVLRIGNVSTAHNHGTL 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,821,276
Number of Sequences: 1393205
Number of extensions: 8808968
Number of successful extensions: 16780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16775
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
