>KMC001424A_C01 KMC001424A_c01
ccttcAAATCAACATTATATCATAATGAAACTAAGAAATTAATAAGATAATCCAAAACAA
AAGAGCATGGTTTATTCAACAAACCTTGTGTTAAAAAAAAAAACCGTTAAATCAACATTA
TATCATAATGAAACTAAAAAATTAATAAGATAATCTAAAACAAAAGAGCATGGGTTTATT
CAACAAACCTTTAATAACAAGGACAACTTTACATTTAATTTGCTTCCCATTAGACATATA
TCTATGAACAATGGCCTGCAATCACAGGGGTCACCTTTGTGTCATTATAGCTAAATGTAT
GTTATATTTGGCACCATGGCCCATGAAATCTTCTTCAACCACTCGACATAACAGAAATTT
TCCCAGCATTTTTTTTCTCCCTTCTTTTTCTTTAATTACCACATATGATTACATCTCATT
TGCCATGATAATGATAGTAGTTAACAAATGCCAGAGCCAATTAAGATTTCTTTCTTCTTA
ACCAGCCCAAAGCATGACCCTTGATCATGAGAAATTCTCACATGAGCACAATGACTATAA
ACACAAATTACCATTAAAAGCATTTGAAAACATAAATGGCCAATTTGGGTCATTTAATCG
AGTGTCTAATTTCATCCCAAGTGAGAGTGTTAAGTAAGTTAGCCCCTAAAAGAAAGAAAT
ACTCACGTGATCTCCGATAGCGATCTTTATTTCTATCCAAGGTCACGATGCGTTTTTCAT
TCTGGCAGCGACTAATTTATCCGACACTTAAAACTTTTATGGGACGAAATTGAACTTCAC
TCTTGTAAATAATAGTGATTGTGCTCAACCAAGAATTGGTCATAGATCAAACTCACTTTA
CTTGCAGCCACCAACACCAAACCCAAGCTTTCCACCACCAACATCATACACAACCTCAAT
GGTTTTCTGCTGCACATTCCCAAAGATGGTGACGTCACTGTCATCCCCATTTGGAGCAAA
CG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC001424A_C01 KMC001424A_c01
         (962 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T01996 nucleoid DNA-binding protein cnd41, chloroplast - co...    64  5e-09
dbj|BAC22609.1| 41 kD chloroplast nucleoid DNA binding protein (...    63  6e-09
ref|NP_196638.2| nucleoid DNA-binding protein cnd41 - like prote...    58  2e-07
pir||T50786 nucleoid DNA-binding protein cnd41-like protein - Ar...    58  2e-07
gb|AAM74221.1|AF518565_1 putative chloroplast nucleoid DNA-bindi...    54  3e-06

>pir||T01996 nucleoid DNA-binding protein cnd41, chloroplast - common tobacco
           gi|2541876|dbj|BAA22813.1| CND41, chloroplast nucleoid
           DNA binding protein [Nicotiana tabacum]
          Length = 502

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 27/39 (69%), Positives = 32/39 (81%)
 Frame = -3

Query: 960 FAPNGDDSDVTIFGNVQQKTIEVVYDVGGGKLGFGVGGC 844
           FA NGDD  + IFGN+QQ+T+EVVYDV GG+LGFG  GC
Sbjct: 463 FAGNGDDDSIGIFGNIQQQTLEVVYDVAGGQLGFGYKGC 501

>dbj|BAC22609.1| 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana
           sylvestris]
          Length = 502

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 27/39 (69%), Positives = 32/39 (81%)
 Frame = -3

Query: 960 FAPNGDDSDVTIFGNVQQKTIEVVYDVGGGKLGFGVGGC 844
           FA NGDD  + IFGN+QQ+T+EVVYDV GG+LGFG  GC
Sbjct: 463 FAGNGDDDTIGIFGNIQQQTLEVVYDVAGGQLGFGYKGC 501

>ref|NP_196638.2| nucleoid DNA-binding protein cnd41 - like protein; protein id:
           At5g10770.1, supported by cDNA: gi_18700102 [Arabidopsis
           thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40
           [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1|
           At5g10770/T30N20_40 [Arabidopsis thaliana]
          Length = 474

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 960 FAPNGDDSDVTIFGNVQQKTIEVVYDVGGGKLGFGVGGC 844
           FA N DDS+  IFGNVQQ+T+EVVYD  GG++GF   GC
Sbjct: 435 FAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGC 473

>pir||T50786 nucleoid DNA-binding protein cnd41-like protein - Arabidopsis
           thaliana gi|8979711|emb|CAB96832.1| nucleoid DNA-binding
           protein cnd41-like protein [Arabidopsis thaliana]
          Length = 446

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 960 FAPNGDDSDVTIFGNVQQKTIEVVYDVGGGKLGFGVGGC 844
           FA N DDS+  IFGNVQQ+T+EVVYD  GG++GF   GC
Sbjct: 407 FAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGC 445

>gb|AAM74221.1|AF518565_1 putative chloroplast nucleoid DNA-binding protein [Brassica
           oleracea]
          Length = 165

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 23/39 (58%), Positives = 29/39 (73%)
 Frame = -3

Query: 960 FAPNGDDSDVTIFGNVQQKTIEVVYDVGGGKLGFGVGGC 844
           FA N DD++  IFGNVQQ+T+EVVYD   G++GF   GC
Sbjct: 126 FAGNSDDNNAAIFGNVQQQTLEVVYDGAAGRVGFAPNGC 164

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 802,815,769
Number of Sequences: 1393205
Number of extensions: 17595878
Number of successful extensions: 55217
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 44720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53884
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54633031304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFL003h05_f BP033582 1 539 2 MFB069f12_f BP039032 70 543 3 MR022h03_f BP077710 153 503 4 MF058a10_f BP031333 157 565 5 MF047h10_f BP030793 178 644 6 MF065b08_f BP031739 178 630 7 SPDL035b12_f BP054182 179 690 8 GENLf087f07 BP067102 352 761 9 MF078f03_f BP032432 447 656 10 MWM159a07_f AV767181 594 836 11 MWL044g03_f AV769325 766 966

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