Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001417A_C01 KMC001417A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB63817.1| putative kinase [Oryza sativa (japonica cultivar... 117 8e-26
ref|NP_190006.1| protein kinase-like protein; protein id: At3g44... 117 1e-25
gb|AAL04423.1| LSTK-1-like kinase [Lycopersicon esculentum] 82 5e-15
pir||A96587 hypothetical protein F20D21.32 [imported] - Arabidop... 81 8e-15
ref|NP_175853.1| hypothetical protein; protein id: At1g54510.1 [... 81 8e-15
>dbj|BAB63817.1| putative kinase [Oryza sativa (japonica cultivar-group)]
gi|21644639|dbj|BAC01197.1| putative kinase [Oryza sativa
(japonica cultivar-group)]
Length = 943
Score = 117 bits (293), Expect = 8e-26
Identities = 61/80 (76%), Positives = 65/80 (81%)
Frame = -1
Query: 510 TKFNPPTTAEEAPVKETLDVKSSTQRAEALEGLLELSADLLQQNRLEELSIVLKPFGKDK 331
T N E +P KE LDVKS QRAEALEGLLELSADLLQ NRLEEL++VLKPFGKDK
Sbjct: 857 TAINNGFKEEASPTKEILDVKSFRQRAEALEGLLELSADLLQHNRLEELAVVLKPFGKDK 916
Query: 330 VSPRETAIWLAKSLKGLMVD 271
VSPRETAIWLAKS KG+M D
Sbjct: 917 VSPRETAIWLAKSFKGMMND 936
>ref|NP_190006.1| protein kinase-like protein; protein id: At3g44200.1 [Arabidopsis
thaliana] gi|11358724|pir||T49136 protein kinase-like
protein - Arabidopsis thaliana gi|7635465|emb|CAB88428.1|
protein kinase-like protein [Arabidopsis thaliana]
Length = 941
Score = 117 bits (292), Expect = 1e-25
Identities = 58/73 (79%), Positives = 67/73 (91%)
Frame = -1
Query: 489 TAEEAPVKETLDVKSSTQRAEALEGLLELSADLLQQNRLEELSIVLKPFGKDKVSPRETA 310
T PVKETLD+KS QRAEALEGLLELSADLL+Q+RLEEL+IVL+PFGK+KVSPRETA
Sbjct: 854 TTPTPPVKETLDIKSFRQRAEALEGLLELSADLLEQSRLEELAIVLQPFGKNKVSPRETA 913
Query: 309 IWLAKSLKGLMVD 271
IWLAKSLKG+M++
Sbjct: 914 IWLAKSLKGMMIE 926
>gb|AAL04423.1| LSTK-1-like kinase [Lycopersicon esculentum]
Length = 609
Score = 81.6 bits (200), Expect = 5e-15
Identities = 39/61 (63%), Positives = 49/61 (79%)
Frame = -1
Query: 468 KETLDVKSSTQRAEALEGLLELSADLLQQNRLEELSIVLKPFGKDKVSPRETAIWLAKSL 289
+ ++ S QRAEALEGLLE SA LLQ++R +EL ++LKPFG +KVSPRETAIWL KS+
Sbjct: 541 RRRFNMSSYKQRAEALEGLLEFSARLLQEDRFDELGVLLKPFGPEKVSPRETAIWLTKSI 600
Query: 288 K 286
K
Sbjct: 601 K 601
>pir||A96587 hypothetical protein F20D21.32 [imported] - Arabidopsis thaliana
gi|4585995|gb|AAD25631.1|AC005287_33 Hypothetical
protein [Arabidopsis thaliana]
Length = 425
Score = 80.9 bits (198), Expect = 8e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = -1
Query: 456 DVKSSTQRAEALEGLLELSADLLQQNRLEELSIVLKPFGKDKVSPRETAIWLAKSLK 286
D S QRA+ALEGLLE SA LLQ+ R +EL+++LKPFG KVSPRETAIW+AKSLK
Sbjct: 346 DPSSYRQRADALEGLLEFSARLLQEGRYDELNVLLKPFGPGKVSPRETAIWIAKSLK 402
>ref|NP_175853.1| hypothetical protein; protein id: At1g54510.1 [Arabidopsis
thaliana]
Length = 612
Score = 80.9 bits (198), Expect = 8e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = -1
Query: 456 DVKSSTQRAEALEGLLELSADLLQQNRLEELSIVLKPFGKDKVSPRETAIWLAKSLK 286
D S QRA+ALEGLLE SA LLQ+ R +EL+++LKPFG KVSPRETAIW+AKSLK
Sbjct: 533 DPSSYRQRADALEGLLEFSARLLQEGRYDELNVLLKPFGPGKVSPRETAIWIAKSLK 589
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,309,818
Number of Sequences: 1393205
Number of extensions: 8476689
Number of successful extensions: 29284
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27049
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
