Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001415A_C01 KMC001415A_c01
(786 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566182.1| expressed protein; protein id: At3g02790.1, sup... 172 6e-42
ref|NP_197151.1| putative protein; protein id: At5g16470.1 [Arab... 164 2e-39
emb|CAC33094.1| hypothetical protein [Rhodomonas sp. CS24] 77 2e-13
gb|EAA11520.1| agCP6191 [Anopheles gambiae str. PEST] 38 0.15
gb|AAA35584.1| basonuclin 37 0.25
>ref|NP_566182.1| expressed protein; protein id: At3g02790.1, supported by cDNA:
gi_13605546, supported by cDNA: gi_16323295 [Arabidopsis
thaliana] gi|6728983|gb|AAF26981.1|AC018363_26 unknown
protein [Arabidopsis thaliana]
gi|13605547|gb|AAK32767.1|AF361599_1 AT3g02790/F13E7_27
[Arabidopsis thaliana] gi|16323296|gb|AAL15403.1|
AT3g02790/F13E7_27 [Arabidopsis thaliana]
Length = 105
Score = 172 bits (435), Expect = 6e-42
Identities = 76/105 (72%), Positives = 92/105 (87%)
Frame = -2
Query: 605 MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGMKDRTGLEKGGHAKWECPHCKVTAPDVK 426
MTGKAKPKKHTAKE+ AK+DAA TNRGGGKAG+ DRTG EKGGHAK+ECPHCK+TAP +K
Sbjct: 1 MTGKAKPKKHTAKEIQAKIDAALTNRGGGKAGIADRTGKEKGGHAKYECPHCKITAPGLK 60
Query: 425 SMQIHHEARHPKIPFEEDKVVNLHATVVAESSTKPRPGVRGSLKK 291
+MQIHHE++HP I +EE K+VNLHA + + +KP+PG+RGSLKK
Sbjct: 61 TMQIHHESKHPNIIYEESKLVNLHAVLAPVAESKPKPGIRGSLKK 105
>ref|NP_197151.1| putative protein; protein id: At5g16470.1 [Arabidopsis thaliana]
gi|9759129|dbj|BAB09614.1|
gb|AAF26981.1~gene_id:MQK4.20~similar to unknown protein
[Arabidopsis thaliana] gi|27808636|gb|AAO24598.1|
At5g16470 [Arabidopsis thaliana]
Length = 104
Score = 164 bits (414), Expect = 2e-39
Identities = 76/106 (71%), Positives = 91/106 (85%), Gaps = 1/106 (0%)
Frame = -2
Query: 605 MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGMKDRTGLEKGGHAKWECPHCKVTAPDVK 426
MTGKAKPKKHTAKEL AK DAA TNRGGGKAG+ DRTG EKGGHAK+ECPHCK+T PD+K
Sbjct: 1 MTGKAKPKKHTAKELQAKADAALTNRGGGKAGLADRTGKEKGGHAKYECPHCKITVPDLK 60
Query: 425 SMQIHHEARHPKIPFEEDKVVNLHATVVAES-STKPRPGVRGSLKK 291
+MQIHHE++HPK+ +EE + NLH + A + S+KP+PG+RGSLKK
Sbjct: 61 TMQIHHESKHPKLTYEEPR--NLHEALAAPAESSKPKPGIRGSLKK 104
>emb|CAC33094.1| hypothetical protein [Rhodomonas sp. CS24]
Length = 124
Score = 77.4 bits (189), Expect = 2e-13
Identities = 36/69 (52%), Positives = 49/69 (70%)
Frame = -2
Query: 596 KAKPKKHTAKELAAKLDAATTNRGGGKAGMKDRTGLEKGGHAKWECPHCKVTAPDVKSMQ 417
K KHT+ E+A+K AT N GGGKAG++DR G K GHAK+ CP CK+ A +K+MQ
Sbjct: 17 KGVAAKHTSGEVASKTALATRNAGGGKAGLQDRKG-GKAGHAKFICPECKMQAASMKNMQ 75
Query: 416 IHHEARHPK 390
H++++HPK
Sbjct: 76 DHYDSKHPK 84
>gb|EAA11520.1| agCP6191 [Anopheles gambiae str. PEST]
Length = 751
Score = 38.1 bits (87), Expect = 0.15
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -2
Query: 632 EEEKGEKLTMTGKAKPKKHTAKELAAKLDAATTNRGGGKA-GMKDRTGLEKGGHAKWECP 456
+E+ G K K KK AK+ A+ D TT+ G K K T K C
Sbjct: 246 DEKDGSKQQTPTKKSAKKEDAKDSNAEDDRKTTDDGSDKKRSTKINTKYRTSNFIKLTCT 305
Query: 455 HCKVTAPDVKSMQIHHEARHPKI 387
HCK+ K Q H R K+
Sbjct: 306 HCKLKCVTFKEYQTHLYTRTHKM 328
>gb|AAA35584.1| basonuclin
Length = 993
Score = 37.4 bits (85), Expect = 0.25
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Frame = -2
Query: 725 ISNLGSNFSSPRSSIA*SQRESNNKP-LINFPEE--EKGEKLTMTGKAKPK-------KH 576
I + G+ +P + S+RE+ + P LI P E + G + T +P+ +
Sbjct: 614 IESSGAISQTPEQATHNSERETEHTPALIMVPREVEDGGHEHYFTPGMEPQVPFSDYMEL 673
Query: 575 TAKELAAKLDAATTNRGGGKAGMKDRTGLEK-GGHA--------KWECPHCKVTAPDVKS 423
+ LA L +A +NRG ++D LE G HA +++C CK T + S
Sbjct: 674 QQRLLAGGLFSALSNRGMAFPCLEDSKELEHVGQHALARQIEENRFQCDICKKTFKNACS 733
Query: 422 MQIHHEARHPK 390
++IHH+ H K
Sbjct: 734 VKIHHKNMHVK 744
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 740,327,411
Number of Sequences: 1393205
Number of extensions: 18388503
Number of successful extensions: 88895
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 74544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88100
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39215601880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
