Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001414A_C02 KMC001414A_c02
(758 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196380.1| putative protein; protein id: At5g07630.1 [Arab... 89 7e-17
dbj|BAC57698.1| P0683C09.1 [Oryza sativa (japonica cultivar-group)] 77 4e-13
ref|NP_176241.1| hypothetical protein; protein id: At1g60380.1 [... 33 5.8
ref|NP_176237.1| hypothetical protein; protein id: At1g60340.1 [... 32 7.6
>ref|NP_196380.1| putative protein; protein id: At5g07630.1 [Arabidopsis thaliana]
gi|9759584|dbj|BAB11441.1|
gb|AAD38624.1~gene_id:MBK20.7~similar to unknown protein
[Arabidopsis thaliana]
Length = 401
Score = 89.0 bits (219), Expect = 7e-17
Identities = 39/64 (60%), Positives = 50/64 (77%)
Frame = -1
Query: 695 WIILLLSGVITLISENVFLDQDNFWPSFMIHFSVGLACFCVSAYVIYCREKPFIKRITRF 516
W IL+LS +ITLISE LD+ NFW +F +HF +G+ CFC+SA VIY RE+ FIKRI RF
Sbjct: 335 WQILILSSIITLISEKTILDRKNFWETFPLHFGIGVICFCLSAIVIYRRERVFIKRIKRF 394
Query: 515 RDHS 504
RD++
Sbjct: 395 RDYN 398
>dbj|BAC57698.1| P0683C09.1 [Oryza sativa (japonica cultivar-group)]
Length = 361
Score = 76.6 bits (187), Expect = 4e-13
Identities = 38/80 (47%), Positives = 53/80 (65%)
Frame = -1
Query: 758 FIKNYFKGSSSFSFCDCLPSGWIILLLSGVITLISENVFLDQDNFWPSFMIHFSVGLACF 579
FIK+YFKGS FSF CLP+GW +LL+SG+ T SE +FL+++ F + IH ++G+ C
Sbjct: 275 FIKDYFKGS--FSFRHCLPAGWGVLLISGLTTAFSERMFLNRNRFKQTLPIHMAIGIMCL 332
Query: 578 CVSAYVIYCREKPFIKRITR 519
S+ IY EK F+ I R
Sbjct: 333 GFSSLEIYRGEKQFLTSIIR 352
>ref|NP_176241.1| hypothetical protein; protein id: At1g60380.1 [Arabidopsis
thaliana] gi|7486926|pir||T02288 hypothetical protein
T13D8.25 - Arabidopsis thaliana
gi|3249082|gb|AAC24066.1| Contains similarity to
gb|X92204 NAM gene product from Petunia hybrida.
[Arabidopsis thaliana]
Length = 318
Score = 32.7 bits (73), Expect = 5.8
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = -3
Query: 237 LIEKKEVEKAIGFSRCLLGCYFWHPXFFTQSKIVSQLTLGNN*IVKQN 94
LI+ +E K +GF + L C W P + +S ++ + L NN KQ+
Sbjct: 83 LIKSEETGKILGFKKILKFCLKWKPREYKRSLVMEEYRLTNNFNWKQD 130
>ref|NP_176237.1| hypothetical protein; protein id: At1g60340.1 [Arabidopsis
thaliana] gi|7486922|pir||T02284 hypothetical protein
T13D8.21 - Arabidopsis thaliana
gi|3249090|gb|AAC24074.1| Contains similarity to CUC2
protein gb|1944131 from A. thaliana. [Arabidopsis
thaliana]
Length = 371
Score = 32.3 bits (72), Expect = 7.6
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = -3
Query: 237 LIEKKEVEKAIGFSRCLLGCYFWHPXFFTQSKIVSQLTLGNN*IVKQN 94
LI+ +E K +GF + L C W P + +S ++ + L NN KQ+
Sbjct: 93 LIKSEETGKILGFKKILKFCIKWKPIEYKRSWVMEEYRLTNNLNWKQD 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,796,572
Number of Sequences: 1393205
Number of extensions: 15200213
Number of successful extensions: 38284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38144
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
