Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001412A_C01 KMC001412A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO63959.1| unknown protein [Arabidopsis thaliana] 203 1e-51
ref|ZP_00116575.1| hypothetical protein [Synechococcus sp. WH 8102] 33 3.0
ref|XP_223534.1| similar to SH3-domain binding protein 2 [Mus mu... 33 3.9
ref|NP_011686.1| converts phosphatidylserine to phosphatidyletha... 33 3.9
pir||T20730 hypothetical protein F10G8.8 - Caenorhabditis elegans 33 3.9
>gb|AAO63959.1| unknown protein [Arabidopsis thaliana]
Length = 152
Score = 203 bits (517), Expect = 1e-51
Identities = 96/137 (70%), Positives = 111/137 (80%)
Frame = -3
Query: 613 EHVDEVLRSACLSGYLYIRTRWATLPGELPPIDDTEVDDWLPRFVVLHGTCIFLYLLSTD 434
EHVDEVLRSA LSGYL+IR+RWA LPGE PPIDDTEVDDWLPRFVVL G C+F YLLSTD
Sbjct: 13 EHVDEVLRSARLSGYLFIRSRWAALPGEPPPIDDTEVDDWLPRFVVLQGPCLFFYLLSTD 72
Query: 433 ISPQDSTLLSDIVEVGRLPCFKREDDDVRYAFYILTCHGLRYECSSNSMIQVDSWLSALQ 254
+SPQDSTLL+DIVE+G +P + RE D+ Y FYILT GLR+ECSS S QVDSWLS L+
Sbjct: 73 LSPQDSTLLADIVEIGSVPSYTREFDETHYCFYILTRQGLRFECSSTSKTQVDSWLSVLR 132
Query: 253 QHCKLKSDTSVPNGSIE 203
CK + + + NGS+E
Sbjct: 133 LDCKSEPEERLSNGSVE 149
>ref|ZP_00116575.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 343
Score = 33.1 bits (74), Expect = 3.0
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -3
Query: 520 IDDTEVDDWLPRFVVLHGTCIFLYLLSTDISPQDSTLLSDIVEVGR 383
++DT +WLP+ +VL+ +F L+ + S L ++IV +GR
Sbjct: 140 LEDTSDLEWLPQELVLYADALFQQTLTVSLPDNASFLSAEIVRLGR 185
>ref|XP_223534.1| similar to SH3-domain binding protein 2 [Mus musculus] [Rattus
norvegicus]
Length = 573
Score = 32.7 bits (73), Expect = 3.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 496 WLPRFVVLHGTCIFLYLLSTDISPQDSTLLSDIVEVGR 383
W RFV++H CI+ + ST SPQ + LS V R
Sbjct: 46 WPLRFVIIHQRCIYYFKSSTSASPQGAFSLSGYNRVMR 83
>ref|NP_011686.1| converts phosphatidylserine to phosphatidylethanolamine; Psd2p
[Saccharomyces cerevisiae]
gi|1706516|sp|P53037|DPS2_YEAST PHOSPHATIDYLSERINE
DECARBOXYLASE PROENZYME 2 PRECURSOR
gi|2132390|pir||S64484 phosphatidylserine decarboxylase
(EC 4.1.1.65) 2 precursor - yeast (Saccharomyces
cerevisiae) gi|1323300|emb|CAA97196.1| ORF YGR170w
[Saccharomyces cerevisiae]
Length = 1138
Score = 32.7 bits (73), Expect = 3.9
Identities = 21/67 (31%), Positives = 37/67 (54%)
Frame = +3
Query: 351 TSSSSRLKHGNLPTSTISDRRVES*GLISVDNKYKNIHVPWRTTKRGSQSSTSVSSIGGS 530
T S R N +ST+S+ GL S + +N++V T +G+Q+STS++S+ S
Sbjct: 96 TPSRPRTTTANTSSSTLSNS-----GLSSHSHSSRNLNV----TSKGNQTSTSINSVSSS 146
Query: 531 SPGSVAH 551
+ + +H
Sbjct: 147 ATPAPSH 153
>pir||T20730 hypothetical protein F10G8.8 - Caenorhabditis elegans
Length = 1041
Score = 32.7 bits (73), Expect = 3.9
Identities = 31/105 (29%), Positives = 45/105 (42%)
Frame = -3
Query: 562 IRTRWATLPGELPPIDDTEVDDWLPRFVVLHGTCIFLYLLSTDISPQDSTLLSDIVEVGR 383
+R W L G+ +DW +VVL G + LY D+ +DST V++ +
Sbjct: 291 LRKGWLMLRGKSD-------NDWCKHWVVLAGLQLKLY---KDVWAEDSTEPLLTVDLSQ 340
Query: 382 LPCFKREDDDVRYAFYILTCHGLRYECSSNSMIQVDSWLSALQQH 248
Y I C RY S+ + DSW+SALQQ+
Sbjct: 341 CENVYPSASARNYGIEI-KCRRTRYVLSAMTPGIRDSWVSALQQN 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,386,969
Number of Sequences: 1393205
Number of extensions: 9434896
Number of successful extensions: 26985
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26950
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
