Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001411A_C01 KMC001411A_c01
(706 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42397.1| putative actin [Arabidopsis thaliana] 175 6e-43
ref|NP_199163.1| actin-like protein; protein id: At5g43500.1, su... 175 6e-43
gb|AAH32744.1| Similar to likely ortholog of mouse actin-related... 60 2e-08
ref|NP_075050.1| actin-related protein 8; ARP8 (actin-related pr... 60 2e-08
ref|XP_214270.1| similar to actin-related protein 8 homolog [Mus... 60 3e-08
>dbj|BAC42397.1| putative actin [Arabidopsis thaliana]
Length = 584
Score = 175 bits (443), Expect = 6e-43
Identities = 86/124 (69%), Positives = 97/124 (77%)
Frame = -3
Query: 704 VXLPEAITHCILSTGRIDIQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPNEAIDTV 525
+ L EAIT ILS GRID++RKLF SIQL GG LT GLV AVEERVLHAIPP EAIDTV
Sbjct: 460 IGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTV 519
Query: 524 EVLQSRTNPTFVPWKGGAILGVLDLGRDAWISREDWIKNGVHVGSNRKYKDSYFLQAQAM 345
+VL SRT P FV WKGGAILG+LD GR+AWI R W+ NGV+ G +KYKDSY LQ QAM
Sbjct: 520 QVLPSRTEPQFVTWKGGAILGILDFGREAWIERRQWMVNGVNKGGLKKYKDSYHLQGQAM 579
Query: 344 CYMN 333
++N
Sbjct: 580 YFIN 583
>ref|NP_199163.1| actin-like protein; protein id: At5g43500.1, supported by cDNA:
gi_15982920 [Arabidopsis thaliana]
gi|8843903|dbj|BAA97429.1| actin-like protein
[Arabidopsis thaliana] gi|15982921|gb|AAL09807.1|
AT5g43500/MWF20_22 [Arabidopsis thaliana]
Length = 596
Score = 175 bits (443), Expect = 6e-43
Identities = 86/124 (69%), Positives = 97/124 (77%)
Frame = -3
Query: 704 VXLPEAITHCILSTGRIDIQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPNEAIDTV 525
+ L EAIT ILS GRID++RKLF SIQL GG LT GLV AVEERVLHAIPP EAIDTV
Sbjct: 472 IGLAEAITSSILSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTV 531
Query: 524 EVLQSRTNPTFVPWKGGAILGVLDLGRDAWISREDWIKNGVHVGSNRKYKDSYFLQAQAM 345
+VL SRT P FV WKGGAILG+LD GR+AWI R W+ NGV+ G +KYKDSY LQ QAM
Sbjct: 532 QVLPSRTEPQFVTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAM 591
Query: 344 CYMN 333
++N
Sbjct: 592 YFIN 595
>gb|AAH32744.1| Similar to likely ortholog of mouse actin-related protein 8 homolog
(S. cerevisiae) [Homo sapiens]
Length = 329
Score = 60.5 bits (145), Expect = 2e-08
Identities = 32/105 (30%), Positives = 58/105 (54%), Gaps = 4/105 (3%)
Frame = -3
Query: 698 LPEAITHCILSTGRIDIQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPN--EAIDTV 525
L +AI H I D ++K++ SI + GG + + ++ R+L+ +PP+ I+ V
Sbjct: 216 LDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENV 275
Query: 524 EVLQ--SRTNPTFVPWKGGAILGVLDLGRDAWISREDWIKNGVHV 396
+V+ +P + WKGGA+L LD ++ WI + +W + GV +
Sbjct: 276 DVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRM 320
>ref|NP_075050.1| actin-related protein 8; ARP8 (actin-related protein 8, yeast)
homolog [Homo sapiens] gi|10439016|dbj|BAB15402.1|
unnamed protein product [Homo sapiens]
Length = 374
Score = 60.5 bits (145), Expect = 2e-08
Identities = 32/105 (30%), Positives = 58/105 (54%), Gaps = 4/105 (3%)
Frame = -3
Query: 698 LPEAITHCILSTGRIDIQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPN--EAIDTV 525
L +AI H I D ++K++ SI + GG + + ++ R+L+ +PP+ I+ V
Sbjct: 261 LDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENV 320
Query: 524 EVLQ--SRTNPTFVPWKGGAILGVLDLGRDAWISREDWIKNGVHV 396
+V+ +P + WKGGA+L LD ++ WI + +W + GV +
Sbjct: 321 DVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRM 365
>ref|XP_214270.1| similar to actin-related protein 8 homolog [Mus musculus] [Rattus
norvegicus]
Length = 143
Score = 60.1 bits (144), Expect = 3e-08
Identities = 31/105 (29%), Positives = 58/105 (54%), Gaps = 4/105 (3%)
Frame = -3
Query: 698 LPEAITHCILSTGRIDIQRKLFCSIQLTGGVALTNGLVPAVEERVLHAIPPN--EAIDTV 525
L +AI H + D ++K++ SI + GG + + ++ R+L+ +PP+ I+ V
Sbjct: 30 LDKAILHSVDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENV 89
Query: 524 EVLQ--SRTNPTFVPWKGGAILGVLDLGRDAWISREDWIKNGVHV 396
+V+ +P + WKGGA+L LD ++ WI + +W + GV +
Sbjct: 90 DVITRPKDMDPRLISWKGGAVLACLDTTQELWIYQREWQRFGVRM 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,631,222
Number of Sequences: 1393205
Number of extensions: 12621389
Number of successful extensions: 32512
Number of sequences better than 10.0: 905
Number of HSP's better than 10.0 without gapping: 30801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31784
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
