Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001410A_C01 KMC001410A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA70843.1| replicase [Phocine distemper virus] 38 0.10
ref|NP_049317.1| SecY-independent transporter protein [Porphyra ... 34 1.5
pir||A45389 genome polyprotein - canine distemper virus (strain ... 34 1.5
ref|NP_047207.1| large polymerase protein L [canine distemper vi... 34 1.5
gb|AAG30921.1|AF305419_6 large polymerase protein L [canine dist... 34 1.5
>emb|CAA70843.1| replicase [Phocine distemper virus]
Length = 2184
Score = 37.7 bits (86), Expect = 0.10
Identities = 37/124 (29%), Positives = 62/124 (49%), Gaps = 7/124 (5%)
Frame = +3
Query: 33 MFLHIIPVGTIQ*QVNQILRMYIQLNRINYQNSKPSTMV*QERIIMIRKS---RSRNSLY 203
M +H I +G+I +NQ L Y Q + Y N S Q++II ++ + NS+Y
Sbjct: 61 MIIHCIEIGSI---INQTLLSYPQYKHVIYPNCNKSLFHAQDQIISLKLRTIFKRGNSIY 117
Query: 204 QKLSNSMK----NQNFHLEGASETPKQTAVTCRLKLKKSLQSSNIKWKHQKPLRRQCSKK 371
K+++ +K N N ++ G ET +T T ++ +QSS +W +P + K
Sbjct: 118 SKITDGIKRCLVNINLNI-GLGETLDKTVRTNIDEVGIVMQSS--QW--FEPFLLWFTIK 172
Query: 372 TKMR 383
T+MR
Sbjct: 173 TEMR 176
>ref|NP_049317.1| SecY-independent transporter protein [Porphyra purpurea]
gi|7521681|pir||T11241 SecY-independent transporter-like
protein - red alga (Porphyra purpurea) mitochondrion
gi|4106953|gb|AAD03120.1| SecY-independent transporter
protein [Porphyra purpurea]
Length = 244
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 446 FLMKGTWYISHSWIQSQITLPSHLSFFAALSSERFLMFP 330
F + +WY S WI S++ LPS L +F +L + F+ P
Sbjct: 87 FFLATSWYKSQVWIFSRLILPSFLVYFLSLLTCYFVALP 125
>pir||A45389 genome polyprotein - canine distemper virus (strain Onderstepoort)
Length = 2161
Score = 33.9 bits (76), Expect = 1.5
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Frame = +3
Query: 33 MFLHIIPVGTIQ*QVNQILRMYIQLNRINYQNSKPSTMV*QERIIMIRKS---RSRNSLY 203
M ++ I +G+I +NQ L Y + N + Y N Q+R+I +R + NS+Y
Sbjct: 61 MIINCIEIGSI---INQTLLSYPKHNHVIYPNCNKLLFHAQDRVISLRLRNIFKRGNSIY 117
Query: 204 QKLSNSMK------NQNFHLEGA 254
K+++ +K N N L GA
Sbjct: 118 SKITDGVKKCLNDINLNIGLGGA 140
>ref|NP_047207.1| large polymerase protein L [canine distemper virus]
gi|6226697|sp|P24658|RRPL_CDVO RNA polymerase beta
subunit (Large structural protein) (L protein)
gi|3335055|gb|AAC26996.1| large polymerase protein L
[canine distemper virus]
Length = 2184
Score = 33.9 bits (76), Expect = 1.5
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Frame = +3
Query: 33 MFLHIIPVGTIQ*QVNQILRMYIQLNRINYQNSKPSTMV*QERIIMIRKS---RSRNSLY 203
M ++ I +G+I +NQ L Y + N + Y N Q+R+I +R + NS+Y
Sbjct: 61 MIINCIEIGSI---INQTLLSYPKHNHVIYPNCNKLLFHAQDRVISLRLRNIFKRGNSIY 117
Query: 204 QKLSNSMK------NQNFHLEGA 254
K+++ +K N N L GA
Sbjct: 118 SKITDGVKKCLNDINLNIGLGGA 140
>gb|AAG30921.1|AF305419_6 large polymerase protein L [canine distemper virus]
Length = 2184
Score = 33.9 bits (76), Expect = 1.5
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Frame = +3
Query: 33 MFLHIIPVGTIQ*QVNQILRMYIQLNRINYQNSKPSTMV*QERIIMIRKS---RSRNSLY 203
M ++ I +G+I +NQ L Y + N + Y N Q+R+I +R + NS+Y
Sbjct: 61 MIINCIEIGSI---INQTLLSYPKHNHVIYPNCNKLLFHAQDRVISLRLRNIFKRGNSIY 117
Query: 204 QKLSNSMK------NQNFHLEGA 254
K+++ +K N N L GA
Sbjct: 118 SKITDGVKKCLNDINLNIGLGGA 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,939,787
Number of Sequences: 1393205
Number of extensions: 9218857
Number of successful extensions: 19676
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19674
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
