Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001409A_C01 KMC001409A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176773.1| type 2 peroxiredoxin, putative; protein id: At1... 238 4e-62
gb|AAL90751.1| peroxiredoxin [Populus tremula x Populus tremuloi... 235 2e-61
gb|AAD33602.1|AF133302_1 type 2 peroxiredoxin [Brassica rapa sub... 235 3e-61
gb|AAL35363.2|AF442385_1 thioredoxin peroxidase [Capsicum annuum] 233 2e-60
ref|NP_176772.1| type 2 peroxiredoxin, putative; protein id: At1... 233 2e-60
>ref|NP_176773.1| type 2 peroxiredoxin, putative; protein id: At1g65980.1, supported
by cDNA: 5476., supported by cDNA: gi_12083335,
supported by cDNA: gi_18086473, supported by cDNA:
gi_4704729 [Arabidopsis thaliana]
gi|25347415|pir||B96684 hypothetical protein F12P19.14
[imported] - Arabidopsis thaliana
gi|4704730|gb|AAD28242.1|AF121355_1 peroxiredoxin TPx1
[Arabidopsis thaliana]
gi|6227022|gb|AAF06058.1|AC009513_14 Identical to
gb|AF121355 peroxiredoxin TPx1 from Arabidopsis
thaliana. ESTs gb|T43667, gb|T21559, gb|Z17702,
gb|T46437, gb|T22793, gb|H36300, gb|AA712887, gb|N96902,
gb|H76959, gb|T45886 and gb|Z17703 come from this gene
gi|12083336|gb|AAG48827.1|AF332464_1 putative type 2
peroxiredoxin protein [Arabidopsis thaliana]
gi|18086474|gb|AAL57690.1| At1g65980/F12P19_14
[Arabidopsis thaliana]
Length = 162
Score = 238 bits (607), Expect = 4e-62
Identities = 113/137 (82%), Positives = 127/137 (92%)
Frame = -3
Query: 556 TVSIHSLAAGKKVIIFGVPGAFTPTCSLKHVPGFIERAEELKSKGVDELICISVNDPFVM 377
T S+HSLAAGKKVI+FGVPGAFTPTCS+KHVPGFIE+AEELKSKGVDE+IC SVNDPFVM
Sbjct: 26 TASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVM 85
Query: 376 SSWAKTFPENKHVKFLADGSAKYTHDLGLELDLNDKGLGTRSRRFALLVEDLKVKVANVE 197
+W KT+PENKHVKF+ADGS +YTH LGLELDL DKGLG RSRRFALL++DLKV VANVE
Sbjct: 86 KAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLDDLKVTVANVE 145
Query: 196 DGGEFTVSSAEEIIKAL 146
GGEFTVSSA++I+KAL
Sbjct: 146 SGGEFTVSSADDILKAL 162
>gb|AAL90751.1| peroxiredoxin [Populus tremula x Populus tremuloides]
Length = 162
Score = 235 bits (600), Expect = 2e-61
Identities = 113/136 (83%), Positives = 126/136 (92%)
Frame = -3
Query: 553 VSIHSLAAGKKVIIFGVPGAFTPTCSLKHVPGFIERAEELKSKGVDELICISVNDPFVMS 374
VS+HSL AGKKVI+FGVPGAFTPTCSLKHVPGFIE+A ELKSKGV E++CISVNDPFVM
Sbjct: 27 VSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMK 86
Query: 373 SWAKTFPENKHVKFLADGSAKYTHDLGLELDLNDKGLGTRSRRFALLVEDLKVKVANVED 194
+WAK++PENKHVKFLADGSA YTH LGLELDL +KGLGTRSRRFALLV+DLKVK AN+E
Sbjct: 87 AWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146
Query: 193 GGEFTVSSAEEIIKAL 146
GGEFTVSSAE+I+K L
Sbjct: 147 GGEFTVSSAEDILKDL 162
>gb|AAD33602.1|AF133302_1 type 2 peroxiredoxin [Brassica rapa subsp. pekinensis]
Length = 162
Score = 235 bits (599), Expect = 3e-61
Identities = 112/137 (81%), Positives = 127/137 (91%)
Frame = -3
Query: 556 TVSIHSLAAGKKVIIFGVPGAFTPTCSLKHVPGFIERAEELKSKGVDELICISVNDPFVM 377
TVS+HSLAAGKKVI+FGVPGAFTPTCS+KHVPGFIE+AEELKSKGVDE+IC SVNDPFVM
Sbjct: 26 TVSVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVM 85
Query: 376 SSWAKTFPENKHVKFLADGSAKYTHDLGLELDLNDKGLGTRSRRFALLVEDLKVKVANVE 197
+W KT+PENKHVKF+ADGS +YT LGLELDL DKGLG RSRRFALL+++LKV VANVE
Sbjct: 86 KAWGKTYPENKHVKFVADGSGEYTKLLGLELDLKDKGLGVRSRRFALLIDNLKVTVANVE 145
Query: 196 DGGEFTVSSAEEIIKAL 146
GGEFTVSSA++I+KAL
Sbjct: 146 SGGEFTVSSADDILKAL 162
>gb|AAL35363.2|AF442385_1 thioredoxin peroxidase [Capsicum annuum]
Length = 162
Score = 233 bits (593), Expect = 2e-60
Identities = 110/137 (80%), Positives = 127/137 (92%)
Frame = -3
Query: 556 TVSIHSLAAGKKVIIFGVPGAFTPTCSLKHVPGFIERAEELKSKGVDELICISVNDPFVM 377
+VS+HSLA GKKVI+F VPGAFTPTCS KHVPGFIE+A+ LKSKGV+E++C+SVNDPFVM
Sbjct: 26 SVSVHSLAKGKKVIMFAVPGAFTPTCSTKHVPGFIEKADLLKSKGVEEILCVSVNDPFVM 85
Query: 376 SSWAKTFPENKHVKFLADGSAKYTHDLGLELDLNDKGLGTRSRRFALLVEDLKVKVANVE 197
+WAKTFPENKHVKFLADG+ KYTH LGLELDL++KGLG RSRR+ALLV+DLKVKVANVE
Sbjct: 86 KAWAKTFPENKHVKFLADGAGKYTHALGLELDLSEKGLGVRSRRYALLVDDLKVKVANVE 145
Query: 196 DGGEFTVSSAEEIIKAL 146
GGEFTVS A+EI+KAL
Sbjct: 146 SGGEFTVSGADEILKAL 162
>ref|NP_176772.1| type 2 peroxiredoxin, putative; protein id: At1g65970.1, supported
by cDNA: 10862., supported by cDNA: gi_12083333,
supported by cDNA: gi_4704731 [Arabidopsis thaliana]
gi|25347414|pir||A96684 hypothetical protein F12P19.13
[imported] - Arabidopsis thaliana
gi|6227021|gb|AAF06057.1|AC009513_13 Identical to
gb|AF121356 peroxiredoxin TPx2 from Arabidopsis
thaliana. ESTs gb|T43900, gb|T76320, gb|H76470,
gb|T43099, gb|T21501 and gb|T41996 come from this gene
gi|12083334|gb|AAG48826.1|AF332463_1 putative type 2
peroxiredoxin protein [Arabidopsis thaliana]
gi|21536698|gb|AAM61030.1| type 2 peroxiredoxin,
putative [Arabidopsis thaliana]
gi|27764988|gb|AAO23615.1| At1g65970 [Arabidopsis
thaliana]
Length = 162
Score = 233 bits (593), Expect = 2e-60
Identities = 110/137 (80%), Positives = 126/137 (91%)
Frame = -3
Query: 556 TVSIHSLAAGKKVIIFGVPGAFTPTCSLKHVPGFIERAEELKSKGVDELICISVNDPFVM 377
TVS+HS+AAGKKVI+FGVPGAFTPTCS+ HVPGFI +AEELKSKG+DE+IC SVNDPFVM
Sbjct: 26 TVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVM 85
Query: 376 SSWAKTFPENKHVKFLADGSAKYTHDLGLELDLNDKGLGTRSRRFALLVEDLKVKVANVE 197
+W KT+PENKHVKF+ADGS +YTH LGLELDL DKGLG RSRRFALL+++LKV VANVE
Sbjct: 86 KAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVE 145
Query: 196 DGGEFTVSSAEEIIKAL 146
GGEFTVSSAE+I+KAL
Sbjct: 146 SGGEFTVSSAEDILKAL 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,737,900
Number of Sequences: 1393205
Number of extensions: 10694840
Number of successful extensions: 32086
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 30767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31971
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
