Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001405A_C01 KMC001405A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_048107.1| ORF MSV036 putative DNA polymerase, Choristoneu... 37 0.16
gb|AAM21366.1| stylar self-incompatibility protein [Physalis lon... 33 2.4
ref|NP_719028.1| hypothetical protein [Shewanella oneidensis MR-... 33 4.0
gb|AAM21363.1| stylar self-incompatibility protein [Physalis lon... 32 5.3
gb|AAN86033.1| kinesin 1 [Dictyostelium discoideum] 32 9.0
>ref|NP_048107.1| ORF MSV036 putative DNA polymerase, Choristoneura biennis entomopox
virus DPOL homolog (vaccinia E9L), similar to SW:P30319
[Melanoplus sanguinipes entomopoxvirus]
gi|11261485|pir||T28197 probable DNA-directed DNA
polymerase (EC 2.7.7.7) - Melanoplus sanguinipes
entomopoxvirus gi|4049877|gb|AAC97837.1| ORF MSV036
putative DNA polymerase, Choristoneura biennis entomopox
virus DPOL homolog (vaccinia E9L), similar to SW:P30319
[Melanoplus sanguinipes entomopoxvirus]
Length = 1079
Score = 37.4 bits (85), Expect = 0.16
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +1
Query: 91 DTYECKV*KQGSAIKLPLYERCRKCSDPPYKSNVSSLILHFYKRVISLLEPVTTNSMTTG 270
DT E K+ +G+++ K + S+ H YK +I +++ N
Sbjct: 893 DTLEAKIESKGTSL---------------IKRDYSNFHKHHYKTIIEIIQKSIENKNNNS 937
Query: 271 SNIVVHMNAKVIKSKIFNLSSLHYED-E*SRLFSSKWKSV 387
N+V+ ++IK+ + NL L+Y D ++ +S K+ S+
Sbjct: 938 KNVVIKYIDELIKNLVDNLDKLNYMDFAVTKRYSGKYVSI 977
>gb|AAM21366.1| stylar self-incompatibility protein [Physalis longifolia]
Length = 124
Score = 33.5 bits (75), Expect = 2.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 145 YERCRKCSDPPYKSNV-SSLILHFYKRVISLLEPVTTNSMTTGSNIVVHMNAKVIKS 312
YE+ CS Y N+ SL LH Y+R L + +S+ G N + +K IKS
Sbjct: 54 YEKHGACSQESYNQNMYFSLALHLYER-FDFLSTLKNHSIVPGENYTIQEISKAIKS 109
>ref|NP_719028.1| hypothetical protein [Shewanella oneidensis MR-1]
gi|24349714|gb|AAN56472.1|AE015784_5 hypothetical
protein [Shewanella oneidensis MR-1]
Length = 596
Score = 32.7 bits (73), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 216 QKSYFTPRTRDHKFHDNWQQYSGTYECKGN 305
Q+ YF D+ ++D W Y GTYE N
Sbjct: 363 QEQYFGDDDSDYNYYDRWGYYQGTYEASKN 392
>gb|AAM21363.1| stylar self-incompatibility protein [Physalis longifolia]
Length = 124
Score = 32.3 bits (72), Expect = 5.3
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
Frame = +1
Query: 145 YERCRKCSDPPYKSNV-SSLILHFYKRVISLLEPVTTNSMTTGSNIVVHMNAKVIKS 312
YE+ CS Y N+ SL LH Y+R L + +S+ G N + +K IK+
Sbjct: 54 YEKHGACSQESYNQNMYFSLALHLYER-FDFLSTLKNHSIVPGENYTIQEISKAIKT 109
>gb|AAN86033.1| kinesin 1 [Dictyostelium discoideum]
Length = 1189
Score = 31.6 bits (70), Expect = 9.0
Identities = 18/57 (31%), Positives = 28/57 (48%)
Frame = -3
Query: 599 NSHPDSNEHHDPIIKLECPCSGETPSDVTGNNLDHSLWSELKDFELSKPSNIIPSSS 429
N+ SN +++ L +G TP +T N SLW+ F+ PS+ PSS+
Sbjct: 1086 NNSSISNSNNNSSSNLNANLNGNTPVKITSENSSSSLWN---IFKKKSPSSTPPSST 1139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,573,296
Number of Sequences: 1393205
Number of extensions: 10785171
Number of successful extensions: 25140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25134
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
