Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001402A_C01 KMC001402A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_406915.1| probable gntR-family transcriptional regulatory... 34 1.5
gb|AAH33918.1| DKFZP434B168 protein [Homo sapiens] 32 5.7
ref|NP_056249.1| DKFZP434B168 protein [Homo sapiens] gi|7022950|... 32 5.7
pir||T42652 hypothetical protein DKFZp434E1315.1 - human (fragme... 32 5.7
gb|AAH20523.1|AAH20523 Similar to DKFZP434B168 protein [Homo sap... 32 5.7
>ref|NP_406915.1| probable gntR-family transcriptional regulatory protein [Yersinia
pestis] gi|22124644|ref|NP_668067.1| putative
transcriptional regulator [Yersinia pestis KIM]
gi|25298826|pir||AI0419 probable gntR-family
transcription regulatory protein phnF [imported] -
Yersinia pestis (strain CO92)
gi|15981380|emb|CAC92685.1| probable gntR-family
transcriptional regulatory protein [Yersinia pestis
CO92] gi|21957451|gb|AAM84318.1|AE013674_14 putative
transcriptional regulator [Yersinia pestis KIM]
Length = 241
Score = 33.9 bits (76), Expect = 1.5
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 485 LTYGESRIHLRSCGPVNSSPCCFLD--VVDISW 577
LT GES IHLR+ VN P C +D + D+SW
Sbjct: 123 LTEGESVIHLRTLRRVNGVPVCIIDHYLPDLSW 155
>gb|AAH33918.1| DKFZP434B168 protein [Homo sapiens]
Length = 962
Score = 32.0 bits (71), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 507 ILDSPYVSTFTYQDLQTQPYISVKSALFSKIMILRDKIPHTWCFSNI 367
++D+P Q L+ P +VK + +L +K PHTW NI
Sbjct: 246 LVDTPKQIQLLLQYLKNDPRKAVKRLAIQDLKLLANKTPHTWSRENI 292
>ref|NP_056249.1| DKFZP434B168 protein [Homo sapiens] gi|7022950|dbj|BAA91779.1|
unnamed protein product [Homo sapiens]
gi|10433937|dbj|BAB14067.1| unnamed protein product
[Homo sapiens] gi|21314965|gb|AAH30716.1| DKFZP434B168
protein [Homo sapiens]
Length = 962
Score = 32.0 bits (71), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 507 ILDSPYVSTFTYQDLQTQPYISVKSALFSKIMILRDKIPHTWCFSNI 367
++D+P Q L+ P +VK + +L +K PHTW NI
Sbjct: 246 LVDTPKQIQLLLQYLKNDPRKAVKRLAIQDLKLLANKTPHTWSRENI 292
>pir||T42652 hypothetical protein DKFZp434E1315.1 - human (fragment)
gi|6453465|emb|CAB61376.1| hypothetical protein [Homo
sapiens]
Length = 759
Score = 32.0 bits (71), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 507 ILDSPYVSTFTYQDLQTQPYISVKSALFSKIMILRDKIPHTWCFSNI 367
++D+P Q L+ P +VK + +L +K PHTW NI
Sbjct: 43 LVDTPKQIQLLLQYLKNDPRKAVKRLAIQDLKLLANKTPHTWSRENI 89
>gb|AAH20523.1|AAH20523 Similar to DKFZP434B168 protein [Homo sapiens]
Length = 948
Score = 32.0 bits (71), Expect = 5.7
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 507 ILDSPYVSTFTYQDLQTQPYISVKSALFSKIMILRDKIPHTWCFSNI 367
++D+P Q L+ P +VK + +L +K PHTW NI
Sbjct: 246 LVDTPKQIQLLLQYLKNDPRKAVKRLAIQDLKLLANKTPHTWSRENI 292
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,839,823
Number of Sequences: 1393205
Number of extensions: 10443596
Number of successful extensions: 24226
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24220
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
