Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001401A_C02 KMC001401A_c02
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84471.1| putative permease [Lycopersicon esculentum] 98 9e-20
ref|NP_195518.1| putative protein; protein id: At4g38050.1 [Arab... 91 8e-18
pir||C84677 probable membrane transporter [imported] - Arabidops... 77 1e-13
ref|NP_180349.2| putative membrane transporter; protein id: At2g... 77 1e-13
dbj|BAB63705.1| putative permease 1 [Oryza sativa (japonica cult... 70 1e-11
>gb|AAK84471.1| putative permease [Lycopersicon esculentum]
Length = 489
Score = 97.8 bits (242), Expect = 9e-20
Identities = 46/64 (71%), Positives = 56/64 (86%)
Frame = -2
Query: 582 MGGTDTNTANVIPTMLFLSGITTILHSYFGTRLPLVQGGSFVYLEPALVIINAQEYCNLT 403
MGG+D +TA+V+ T+L LSG+TTILHSYFGTRLPLVQG SFVYL PALVI+N++EY NL
Sbjct: 294 MGGSDKDTADVVSTVLLLSGLTTILHSYFGTRLPLVQGSSFVYLAPALVIMNSEEYRNLA 353
Query: 402 *HFL 391
H+L
Sbjct: 354 DHYL 357
>ref|NP_195518.1| putative protein; protein id: At4g38050.1 [Arabidopsis thaliana]
gi|7485847|pir||T05632 hypothetical protein F20D10.170 -
Arabidopsis thaliana gi|4467111|emb|CAB37545.1| putative
protein [Arabidopsis thaliana]
gi|7270788|emb|CAB80470.1| putative protein [Arabidopsis
thaliana]
Length = 703
Score = 91.3 bits (225), Expect = 8e-18
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = -2
Query: 582 MGGTDTNTANVIPTMLFLSGITTILHSYFGTRLPLVQGGSFVYLEPALVIINAQEYCNLT 403
M G+D +TA+VI TML L+G+TTILH YFGTRLPLVQG SFVYL P LV+IN++E+ NLT
Sbjct: 214 MDGSDKDTASVISTMLLLTGVTTILHCYFGTRLPLVQGSSFVYLAPVLVVINSEEFRNLT 273
Query: 402 *H 397
H
Sbjct: 274 EH 275
>pir||C84677 probable membrane transporter [imported] - Arabidopsis thaliana
gi|3860251|gb|AAC73019.1| putative membrane transporter
[Arabidopsis thaliana]
Length = 721
Score = 77.4 bits (189), Expect = 1e-13
Identities = 36/59 (61%), Positives = 47/59 (79%)
Frame = -2
Query: 582 MGGTDTNTANVIPTMLFLSGITTILHSYFGTRLPLVQGGSFVYLEPALVIINAQEYCNL 406
MGG+ ANV+ T+LF+SGITT+LH+ FG+RLPL+QG SFV+L PAL IIN+ E+ L
Sbjct: 208 MGGSHEEVANVVSTVLFVSGITTLLHTSFGSRLPLIQGPSFVFLAPALAIINSPEFQGL 266
>ref|NP_180349.2| putative membrane transporter; protein id: At2g27810.1, supported
by cDNA: gi_20466158 [Arabidopsis thaliana]
gi|20466159|gb|AAM20397.1| putative membrane transporter
[Arabidopsis thaliana] gi|25083906|gb|AAN72132.1|
putative membrane transporter [Arabidopsis thaliana]
Length = 709
Score = 77.4 bits (189), Expect = 1e-13
Identities = 36/59 (61%), Positives = 47/59 (79%)
Frame = -2
Query: 582 MGGTDTNTANVIPTMLFLSGITTILHSYFGTRLPLVQGGSFVYLEPALVIINAQEYCNL 406
MGG+ ANV+ T+LF+SGITT+LH+ FG+RLPL+QG SFV+L PAL IIN+ E+ L
Sbjct: 208 MGGSHEEVANVVSTVLFVSGITTLLHTSFGSRLPLIQGPSFVFLAPALAIINSPEFQGL 266
>dbj|BAB63705.1| putative permease 1 [Oryza sativa (japonica cultivar-group)]
Length = 680
Score = 70.5 bits (171), Expect = 1e-11
Identities = 34/59 (57%), Positives = 45/59 (75%)
Frame = -2
Query: 582 MGGTDTNTANVIPTMLFLSGITTILHSYFGTRLPLVQGGSFVYLEPALVIINAQEYCNL 406
MGG+ + A V+ T+L +SG+TT+LH++ GTRLPLVQG SFVYL PAL II + E+ L
Sbjct: 180 MGGSPDDMAAVVSTVLLVSGMTTLLHTFCGTRLPLVQGPSFVYLAPALAIIYSPEFFGL 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,737,044
Number of Sequences: 1393205
Number of extensions: 10113250
Number of successful extensions: 20468
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 20013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20465
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
