Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001400A_C01 KMC001400A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97006.1| putative protein [Arabidopsis thaliana] gi|231979... 150 9e-36
ref|NP_197702.1| putative protein; protein id: At5g23110.1 [Arab... 150 9e-36
ref|NP_046191.1| inhibitor of apoptosis protein 3 [Orgyia pseudo... 63 3e-09
ref|NP_177535.2| unknown protein; protein id: At1g73950.1, suppo... 63 3e-09
ref|NP_079402.1| ring finger protein 34; RING finger protein RIF... 60 2e-08
>gb|AAM97006.1| putative protein [Arabidopsis thaliana] gi|23197908|gb|AAN15481.1|
putative protein [Arabidopsis thaliana]
Length = 620
Score = 150 bits (380), Expect = 9e-36
Identities = 67/102 (65%), Positives = 88/102 (85%)
Frame = -2
Query: 589 LSAAGINMDVEKKALLQRTIDLQENLKESQPAFLYEQEKVERATKEADTAKAAWVCRVCL 410
LSAAGINM++E ++LLQRT+ LQE LK+S+ AFL EQE+ E + KEA+TAK+ W+C++C
Sbjct: 519 LSAAGINMELENQSLLQRTLTLQEELKDSKVAFLLEQERAEASMKEAETAKSQWLCQICQ 578
Query: 409 SAEVDITIVPCGHVLCRKCSSAVSKCPFCRLQVTKAIRIFRP 284
+ EV++TIVPCGHVLCR CS++VS+CPFCRLQV + IRIFRP
Sbjct: 579 TKEVEVTIVPCGHVLCRHCSTSVSRCPFCRLQVNRTIRIFRP 620
>ref|NP_197702.1| putative protein; protein id: At5g23110.1 [Arabidopsis thaliana]
gi|9759369|dbj|BAB09828.1|
gene_id:MYJ24.10~ref|NP_055178.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 4706
Score = 150 bits (380), Expect = 9e-36
Identities = 67/102 (65%), Positives = 88/102 (85%)
Frame = -2
Query: 589 LSAAGINMDVEKKALLQRTIDLQENLKESQPAFLYEQEKVERATKEADTAKAAWVCRVCL 410
LSAAGINM++E ++LLQRT+ LQE LK+S+ AFL EQE+ E + KEA+TAK+ W+C++C
Sbjct: 4605 LSAAGINMELENQSLLQRTLTLQEELKDSKVAFLLEQERAEASMKEAETAKSQWLCQICQ 4664
Query: 409 SAEVDITIVPCGHVLCRKCSSAVSKCPFCRLQVTKAIRIFRP 284
+ EV++TIVPCGHVLCR CS++VS+CPFCRLQV + IRIFRP
Sbjct: 4665 TKEVEVTIVPCGHVLCRHCSTSVSRCPFCRLQVNRTIRIFRP 4706
>ref|NP_046191.1| inhibitor of apoptosis protein 3 [Orgyia pseudotsugata multicapsid
nucleopolyhedrovirus] gi|1170471|sp|P41437|IAP3_NPVOP
Apoptosis inhibitor 3 (IAP-3) gi|625582|pir||A53989
apoptosis-inhibiting protein - Orgyia pseudotsugata
multicapsid nuclear polyhedrosis virus
gi|7451521|pir||T10304 inhibitor of apoptosis protein 3
- Orgyia pseudotsugata nuclear polyhedrosis virus
gi|456114|gb|AAB02610.1| iap gene product
gi|1911281|gb|AAC59034.1| inhibitor of apoptosis protein
3 [Orgyia pseudotsugata multicapsid
nucleopolyhedrovirus]
Length = 268
Score = 62.8 bits (151), Expect = 3e-09
Identities = 28/63 (44%), Positives = 43/63 (67%), Gaps = 1/63 (1%)
Frame = -2
Query: 472 VERATKEADTAKAAWVCRVCLSAEVDITIVPCGHVL-CRKCSSAVSKCPFCRLQVTKAIR 296
+ER EA+ A +C++CL AE + VPCGHV+ C KC++ V+ CP CR Q+ KA+R
Sbjct: 206 IERPAVEAEVADDR-LCKICLGAEKTVCFVPCGHVVACGKCAAGVTTCPVCRGQLDKAVR 264
Query: 295 IFR 287
+++
Sbjct: 265 MYQ 267
>ref|NP_177535.2| unknown protein; protein id: At1g73950.1, supported by cDNA:
gi_17529335 [Arabidopsis thaliana]
Length = 466
Score = 62.8 bits (151), Expect = 3e-09
Identities = 31/90 (34%), Positives = 46/90 (50%), Gaps = 1/90 (1%)
Frame = -2
Query: 556 KKALLQRTIDLQENLKESQPAFLYEQEKVERATKEADTAKAAWVCRVCLSAEVDITIVPC 377
KK L + LQ L E + Q++ ER E +CRVC E+ + ++PC
Sbjct: 381 KKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKV------LCRVCFEREISVVLLPC 434
Query: 376 GH-VLCRKCSSAVSKCPFCRLQVTKAIRIF 290
H VLCR CS KCPFCR+ + + + ++
Sbjct: 435 RHRVLCRNCSDKCKKCPFCRITIEERLPVY 464
>ref|NP_079402.1| ring finger protein 34; RING finger protein RIFF [Homo sapiens]
gi|10437953|dbj|BAB15132.1| unnamed protein product
[Homo sapiens]
Length = 372
Score = 60.5 bits (145), Expect = 2e-08
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = -2
Query: 559 EKKALLQRTIDLQENLKESQPAFLYEQEKVERATKEADTAKAAWVCRVCLSAEVDITIVP 380
EK L+++ L + +E+Q ++ E+++ +E D+ +CR+C+ A VD ++
Sbjct: 288 EKWELVEKVNRLYKENEENQKSY---GERLQLQDEEDDS-----LCRICMDAVVDCVLLE 339
Query: 379 CGH-VLCRKCSSAVSKCPFCRLQVTKAIRIFR 287
CGH V C KC +S+CP CR V +A+ +F+
Sbjct: 340 CGHMVTCTKCGKRMSECPICRQYVVRAVHVFK 371
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,817,116
Number of Sequences: 1393205
Number of extensions: 11040202
Number of successful extensions: 28895
Number of sequences better than 10.0: 904
Number of HSP's better than 10.0 without gapping: 27614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28548
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
