Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001397A_C01 KMC001397A_c01
(428 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197516.1| ribosomal protein L7Ae-like; protein id: At5g20... 138 1e-32
ref|NP_193969.1| Ribosomal protein L7Ae - like; protein id: At4g... 138 1e-32
gb|AAM64816.1| Ribosomal protein L7Ae-like [Arabidopsis thaliana] 136 5e-32
ref|NP_192997.1| Ribosomal protein L7Ae -like; protein id: At4g1... 134 3e-31
gb|AAK52522.1|AC079128_5 Putative ribosomal protein L7Ae-like [O... 126 5e-29
>ref|NP_197516.1| ribosomal protein L7Ae-like; protein id: At5g20160.1, supported by
cDNA: 30288., supported by cDNA: gi_15081641, supported
by cDNA: gi_20334835 [Arabidopsis thaliana]
gi|15081642|gb|AAK82476.1| AT5g20160/F5O24_50
[Arabidopsis thaliana] gi|20334836|gb|AAM16174.1|
AT5g20160/F5O24_50 [Arabidopsis thaliana]
gi|21592608|gb|AAM64557.1| ribosomal protein L7Ae-like
[Arabidopsis thaliana]
Length = 128
Score = 138 bits (348), Expect = 1e-32
Identities = 71/78 (91%), Positives = 73/78 (93%)
Frame = -3
Query: 426 SEFVVMAADADPLEILRHLPLLAEDKNVPYVFVPSKPALGRACGVTRPVIACSVTTNEGS 247
SEFVVMAADA+PLEIL HLPLLAEDKNVPYVFVPSK ALGRACGVTRPVIACSVT+NE S
Sbjct: 51 SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110
Query: 246 PLKSQIQPLKDAIEKLLI 193
LKSQIQ LKDAIEKLLI
Sbjct: 111 QLKSQIQHLKDAIEKLLI 128
>ref|NP_193969.1| Ribosomal protein L7Ae - like; protein id: At4g22380.1 [Arabidopsis
thaliana] gi|21554922|gb|AAM63731.1| Ribosomal protein
L7Ae-like [Arabidopsis thaliana]
Length = 128
Score = 138 bits (348), Expect = 1e-32
Identities = 71/78 (91%), Positives = 73/78 (93%)
Frame = -3
Query: 426 SEFVVMAADADPLEILRHLPLLAEDKNVPYVFVPSKPALGRACGVTRPVIACSVTTNEGS 247
SEFVVMAADA+PLEIL HLPLLAEDKNVPYVFVPSK ALGRACGVTRPVIACSVT+NE S
Sbjct: 51 SEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110
Query: 246 PLKSQIQPLKDAIEKLLI 193
LKSQIQ LKDAIEKLLI
Sbjct: 111 QLKSQIQHLKDAIEKLLI 128
>gb|AAM64816.1| Ribosomal protein L7Ae-like [Arabidopsis thaliana]
Length = 128
Score = 136 bits (343), Expect = 5e-32
Identities = 69/78 (88%), Positives = 72/78 (91%)
Frame = -3
Query: 426 SEFVVMAADADPLEILRHLPLLAEDKNVPYVFVPSKPALGRACGVTRPVIACSVTTNEGS 247
SEF+VMAAD +PLEIL HLPLLAEDKNVPYVFVPSK ALGRACGVTRPVIACSVT+NE S
Sbjct: 51 SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110
Query: 246 PLKSQIQPLKDAIEKLLI 193
LKSQIQ LKDAIEKLLI
Sbjct: 111 QLKSQIQHLKDAIEKLLI 128
>ref|NP_192997.1| Ribosomal protein L7Ae -like; protein id: At4g12600.1, supported by
cDNA: 33381., supported by cDNA: gi_13605584, supported
by cDNA: gi_15777868 [Arabidopsis thaliana]
gi|25295060|pir||C85135 Ribosomal protein L7Ae-like
[imported] - Arabidopsis thaliana
gi|5823571|emb|CAB53753.1| Ribosomal protein L7Ae-like
[Arabidopsis thaliana] gi|7267962|emb|CAB78303.1|
Ribosomal protein L7Ae-like [Arabidopsis thaliana]
gi|13605585|gb|AAK32786.1|AF361618_1 AT4g12600/T1P17_190
[Arabidopsis thaliana] gi|15777869|gb|AAL05895.1|
AT4g12600/T1P17_190 [Arabidopsis thaliana]
Length = 128
Score = 134 bits (336), Expect = 3e-31
Identities = 68/78 (87%), Positives = 71/78 (90%)
Frame = -3
Query: 426 SEFVVMAADADPLEILRHLPLLAEDKNVPYVFVPSKPALGRACGVTRPVIACSVTTNEGS 247
SEF+VMAAD +PLEIL HLPLLAEDKNVPYVFVPSK ALGRAC VTRPVIACSVT+NE S
Sbjct: 51 SEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEAS 110
Query: 246 PLKSQIQPLKDAIEKLLI 193
LKSQIQ LKDAIEKLLI
Sbjct: 111 QLKSQIQHLKDAIEKLLI 128
>gb|AAK52522.1|AC079128_5 Putative ribosomal protein L7Ae-like [Oryza sativa]
gi|22711539|gb|AAN04514.1| Putative ribosomal protein
L7Ae-like [Oryza sativa (japonica cultivar-group)]
Length = 126
Score = 126 bits (317), Expect = 5e-29
Identities = 65/78 (83%), Positives = 69/78 (88%)
Frame = -3
Query: 426 SEFVVMAADADPLEILRHLPLLAEDKNVPYVFVPSKPALGRACGVTRPVIACSVTTNEGS 247
+EFVVMAADA+PLEIL HLPLLAEDKNVPYVFVPSK ALGRACGVTRPVIACSVT+NE S
Sbjct: 49 AEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 108
Query: 246 PLKSQIQPLKDAIEKLLI 193
L+ I LK AIEKLLI
Sbjct: 109 NLRDPINNLKVAIEKLLI 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 348,617,316
Number of Sequences: 1393205
Number of extensions: 7222394
Number of successful extensions: 22941
Number of sequences better than 10.0: 270
Number of HSP's better than 10.0 without gapping: 22405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22918
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
