Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001396A_C01 KMC001396A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567236.1| T14P8.6; protein id: At4g02460.1, supported by ... 191 8e-48
pir||T01304 hypothetical protein T14P8.6 - Arabidopsis thaliana ... 191 8e-48
gb|EAA04111.1| ebiP7566 [Anopheles gambiae str. PEST] 116 3e-25
gb|AAH31832.1| PMS2 postmeiotic segregation increased 2 (S. cere... 115 7e-25
gb|AAA50390.1| similar to S. cerevisiae PMS1 Swiss-Prot Accessio... 115 7e-25
>ref|NP_567236.1| T14P8.6; protein id: At4g02460.1, supported by cDNA: gi_15617224
[Arabidopsis thaliana] gi|15617225|gb|AAL01156.1| DNA
mismatch repair protein [Arabidopsis thaliana]
Length = 923
Score = 191 bits (485), Expect = 8e-48
Identities = 89/126 (70%), Positives = 106/126 (83%)
Frame = -1
Query: 687 NGFTLEEDPNAPPGCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTD 508
NGF LEE+P+APPG ++L+++P+SKN FG+ED+K+LIS+L D G ECS SYKT
Sbjct: 778 NGFLLEENPSAPPGKHFRLRAIPYSKNITFGVEDLKDLISTLGDNHG--ECSVASSYKTS 835
Query: 507 TSDSICPSRVRAMLASRACRSSIMIGDALGRNEMQKVFEHLAGLKSPWNCPHGRPTMRHL 328
+DSICPSRVRAMLASRACRSS+MIGD L +NEMQK+ EHLA L+SPWNCPHGRPTMRHL
Sbjct: 836 KTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHL 895
Query: 327 VDLTKL 310
VDLT L
Sbjct: 896 VDLTTL 901
>pir||T01304 hypothetical protein T14P8.6 - Arabidopsis thaliana
gi|3193291|gb|AAC19275.1| Similar to DNA mismatch repair
protein; T14P8.6 [Arabidopsis thaliana]
gi|7269006|emb|CAB80739.1| Similar to DNA mismatch repair
protein, T14P8.6~Contains DNA mismatch repair proteins
mutL / hexB / PMS1 signature AA118-124 [Arabidopsis
thaliana]
Length = 779
Score = 191 bits (485), Expect = 8e-48
Identities = 89/126 (70%), Positives = 106/126 (83%)
Frame = -1
Query: 687 NGFTLEEDPNAPPGCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTD 508
NGF LEE+P+APPG ++L+++P+SKN FG+ED+K+LIS+L D G ECS SYKT
Sbjct: 634 NGFLLEENPSAPPGKHFRLRAIPYSKNITFGVEDLKDLISTLGDNHG--ECSVASSYKTS 691
Query: 507 TSDSICPSRVRAMLASRACRSSIMIGDALGRNEMQKVFEHLAGLKSPWNCPHGRPTMRHL 328
+DSICPSRVRAMLASRACRSS+MIGD L +NEMQK+ EHLA L+SPWNCPHGRPTMRHL
Sbjct: 692 KTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHL 751
Query: 327 VDLTKL 310
VDLT L
Sbjct: 752 VDLTTL 757
>gb|EAA04111.1| ebiP7566 [Anopheles gambiae str. PEST]
Length = 799
Score = 116 bits (290), Expect = 3e-25
Identities = 61/133 (45%), Positives = 77/133 (57%)
Frame = -1
Query: 687 NGFTLEEDPNAPPGCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTD 508
NGF E D AP + +L + P+S+N FG ED+ ELI + D V C
Sbjct: 670 NGFKFEVDGAAPTTKKVRLMAKPYSRNWEFGKEDIDELIFMMQDAPSTV-CR-------- 720
Query: 507 TSDSICPSRVRAMLASRACRSSIMIGDALGRNEMQKVFEHLAGLKSPWNCPHGRPTMRHL 328
PSRVRAM ASRACR S+MIG AL EM+++ H+ + PWNCPHGRPTMRHL
Sbjct: 721 ------PSRVRAMFASRACRKSVMIGRALSVREMERLIRHMGEIDQPWNCPHGRPTMRHL 774
Query: 327 VDLTKLHQMSEQP 289
V+L + Q+ P
Sbjct: 775 VNLAMIRQIDPLP 787
>gb|AAH31832.1| PMS2 postmeiotic segregation increased 2 (S. cerevisiae) [Homo
sapiens]
Length = 879
Score = 115 bits (287), Expect = 7e-25
Identities = 64/128 (50%), Positives = 76/128 (59%)
Frame = -1
Query: 687 NGFTLEEDPNAPPGCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTD 508
NGF D NAP R KL S+P SKN FG +DV ELI LSD G V C
Sbjct: 766 NGFDFVIDENAPVTERAKLISLPTSKNWTFGPQDVDELIFMLSDSPG-VMCR-------- 816
Query: 507 TSDSICPSRVRAMLASRACRSSIMIGDALGRNEMQKVFEHLAGLKSPWNCPHGRPTMRHL 328
PSRV+ M ASRACR S+MIG AL +EM+K+ H+ + PWNCPHGRPTMRH+
Sbjct: 817 ------PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 870
Query: 327 VDLTKLHQ 304
+L + Q
Sbjct: 871 ANLGVISQ 878
>gb|AAA50390.1| similar to S. cerevisiae PMS1 Swiss-Prot Accession Number P14242, S.
cerevisiae MLH1 GenBank Accession Number U07187, E. coli
MUTL Swiss-Prot Accession Number P23367, Salmonella
typhimurium MUTL Swiss-Prot Accession Number P14161,
Streptococcus pneumoniae Swiss-Prot Accession Number
P14160
Length = 862
Score = 115 bits (287), Expect = 7e-25
Identities = 64/128 (50%), Positives = 76/128 (59%)
Frame = -1
Query: 687 NGFTLEEDPNAPPGCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTD 508
NGF D NAP R KL S+P SKN FG +DV ELI LSD G V C
Sbjct: 749 NGFDFVIDENAPVTERAKLISLPTSKNWTFGPQDVDELIFMLSDSPG-VMCR-------- 799
Query: 507 TSDSICPSRVRAMLASRACRSSIMIGDALGRNEMQKVFEHLAGLKSPWNCPHGRPTMRHL 328
PSRV+ M ASRACR S+MIG AL +EM+K+ H+ + PWNCPHGRPTMRH+
Sbjct: 800 ------PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 853
Query: 327 VDLTKLHQ 304
+L + Q
Sbjct: 854 ANLGVISQ 861
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,962,549
Number of Sequences: 1393205
Number of extensions: 13142604
Number of successful extensions: 49881
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 47308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49524
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
