Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001395A_C01 KMC001395A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD03598.1| ethylene response sensor [Vigna radiata] 194 6e-49
pir||T06537 ethylene receptor - garden pea gi|3123666|emb|CAA067... 171 4e-42
gb|AAB94773.1| ERS-like ethylene receptor [Pisum sativum] 171 4e-42
gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya] 143 2e-33
emb|CAD21848.1| ethylene receptor 1 [Fagus sylvatica] 120 9e-27
>gb|AAD03598.1| ethylene response sensor [Vigna radiata]
Length = 636
Score = 194 bits (493), Expect = 6e-49
Identities = 92/107 (85%), Positives = 96/107 (88%)
Frame = -3
Query: 552 HLFTKFTQSRSGPVRSSNVAGLGLAICKRFVNLMGGHIWIESEGLNKGCTATFIVKLGIC 373
HLFTKF QSRSGP R S+ AGLGLAICKRFVNLMGGHIWIESEG KG TATFIVKLGIC
Sbjct: 530 HLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGPGKGSTATFIVKLGIC 589
Query: 372 GNPDPSDHQVANRGQAYSGSGGLARFKPFLKDDDDTGFSTRRNQRSF 232
GNPDPSDHQ R QAYSGSGGLARFKPF+KD+DD+GFSTRRNQRSF
Sbjct: 590 GNPDPSDHQATTRSQAYSGSGGLARFKPFIKDEDDSGFSTRRNQRSF 636
>pir||T06537 ethylene receptor - garden pea gi|3123666|emb|CAA06723.1| ethylene
receptor [Pisum sativum]
Length = 635
Score = 171 bits (434), Expect = 4e-42
Identities = 85/107 (79%), Positives = 92/107 (85%)
Frame = -3
Query: 552 HLFTKFTQSRSGPVRSSNVAGLGLAICKRFVNLMGGHIWIESEGLNKGCTATFIVKLGIC 373
HLFTKFTQS+SG RSS+ +GLGLAICKRFVNLMGGHIW+ESEG +KG TATF+VKLGIC
Sbjct: 530 HLFTKFTQSQSGAGRSSSGSGLGLAICKRFVNLMGGHIWMESEGPDKGSTATFVVKLGIC 589
Query: 372 GNPDPSDHQVANRGQAYSGSGGLARFKPFLKDDDDTGFSTRRNQRSF 232
GNPD SDHQ RGQAYSGSGGLARFK L +D D GFS RRNQRSF
Sbjct: 590 GNPDSSDHQATTRGQAYSGSGGLARFK-HLVNDGDIGFSNRRNQRSF 635
>gb|AAB94773.1| ERS-like ethylene receptor [Pisum sativum]
Length = 635
Score = 171 bits (434), Expect = 4e-42
Identities = 85/107 (79%), Positives = 92/107 (85%)
Frame = -3
Query: 552 HLFTKFTQSRSGPVRSSNVAGLGLAICKRFVNLMGGHIWIESEGLNKGCTATFIVKLGIC 373
HLFTKFTQS+SG RSS+ +GLGLAICKRFVNLMGGHIW+ESEG +KG TATF+VKLGIC
Sbjct: 530 HLFTKFTQSQSGAGRSSSGSGLGLAICKRFVNLMGGHIWMESEGPDKGSTATFVVKLGIC 589
Query: 372 GNPDPSDHQVANRGQAYSGSGGLARFKPFLKDDDDTGFSTRRNQRSF 232
GNPD SDHQ RGQAYSGSGGLARFK L +D D GFS RRNQRSF
Sbjct: 590 GNPDSSDHQATTRGQAYSGSGGLARFK-HLVNDGDIGFSNRRNQRSF 635
>gb|AAG41977.1|AF311942_1 ethylene receptor [Carica papaya]
Length = 634
Score = 143 bits (360), Expect = 2e-33
Identities = 71/108 (65%), Positives = 81/108 (74%), Gaps = 1/108 (0%)
Frame = -3
Query: 552 HLFTKFTQSRSGPVRSSNVAGLGLAICKRFVNLMGGHIWIESEGLNKGCTATFIVKLGIC 373
HLFTKF Q RSG R + AGLGLAICKRFVNLMGGHIWIESEG +KGCTATFIVKLGIC
Sbjct: 527 HLFTKFAQPRSGSSRKNGSAGLGLAICKRFVNLMGGHIWIESEGADKGCTATFIVKLGIC 586
Query: 372 GNP-DPSDHQVANRGQAYSGSGGLARFKPFLKDDDDTGFSTRRNQRSF 232
+P DPS+ +V +GQ GSG L R KP +D++ + S R QRSF
Sbjct: 587 NSPTDPSERKVGTKGQTTHGSGDLTRHKPLYRDNNGSTSSNPRYQRSF 634
>emb|CAD21848.1| ethylene receptor 1 [Fagus sylvatica]
Length = 635
Score = 120 bits (302), Expect = 9e-27
Identities = 68/110 (61%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Frame = -3
Query: 552 HLFTKFTQSRSGPVRSSNVAGLGLAICKR--FVNLMGGHIWIESEGLNKGCTATFIVKLG 379
HLFTKFTQS+SG R + AGLGLAICKR FVN+MGGHIWIESEG +KG ATFIVKLG
Sbjct: 526 HLFTKFTQSQSGSNRRNGGAGLGLAICKRIRFVNIMGGHIWIESEGPDKGSIATFIVKLG 585
Query: 378 ICGNP-DPSDHQVANRGQAYSGSGGLARFKPFLKDDDDTGFSTRRNQRSF 232
IC NP D + QVA G+A++ SG L KP +D + S R QRSF
Sbjct: 586 ICDNPNDSALQQVAPIGRAHNASGDLTGHKPVSRDIVNMDSSNLRYQRSF 635
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,528,123
Number of Sequences: 1393205
Number of extensions: 9665826
Number of successful extensions: 22835
Number of sequences better than 10.0: 872
Number of HSP's better than 10.0 without gapping: 22243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22813
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
