Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001394A_C01 KMC001394A_c01
(846 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197443.1| putative protein; protein id: At5g19420.1 [Arab... 149 4e-35
dbj|BAB64693.1| P0431G06.4 [Oryza sativa (japonica cultivar-group)] 130 3e-29
ref|NP_568268.1| putative protein; protein id: At5g12350.1 [Arab... 122 7e-27
emb|CAC84088.1| ZR4 protein [Medicago sativa] 107 2e-22
ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42... 105 1e-21
>ref|NP_197443.1| putative protein; protein id: At5g19420.1 [Arabidopsis thaliana]
Length = 1121
Score = 149 bits (377), Expect = 4e-35
Identities = 75/115 (65%), Positives = 93/115 (80%), Gaps = 3/115 (2%)
Frame = -3
Query: 826 SNGSSTVSNRHXGHTKQSQ--SDSNNRNGSRTKDSESRNESEWVEPDEPGVYITLTSLPG 653
SNG+ST + +Q+ +++ NR +R+K+SE RNE+EWVE DEPGVYITLT+L G
Sbjct: 1007 SNGTSTPVFDSGSYRQQANHAAEAINRISTRSKESEPRNENEWVEQDEPGVYITLTALAG 1066
Query: 652 GVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEPYHVR-MIDKSSVGVGSDDLAH 491
G +DLKRVRFSRKRFSEKQAE+WWAENR RVYE Y+VR ++DKSSVGVGS+DL H
Sbjct: 1067 GARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQYNVRIVVDKSSVGVGSEDLGH 1121
>dbj|BAB64693.1| P0431G06.4 [Oryza sativa (japonica cultivar-group)]
Length = 1086
Score = 130 bits (326), Expect = 3e-29
Identities = 65/113 (57%), Positives = 83/113 (72%)
Frame = -3
Query: 841 NNQSLSNGSSTVSNRHXGHTKQSQSDSNNRNGSRTKDSESRNESEWVEPDEPGVYITLTS 662
N SNG S+V + GH + +NGSR ++ES +E+EWVE DEPGVYITLT+
Sbjct: 977 NGLLASNGPSSVRIK-AGHPEVG------KNGSRLPEAESCHEAEWVEQDEPGVYITLTA 1029
Query: 661 LPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEPYHVRMIDKSSVGVGSD 503
LPGG +DLKRVRFSRKRFSE QAEQWW ENR RVY+ Y+VRM++KS+ + ++
Sbjct: 1030 LPGGARDLKRVRFSRKRFSETQAEQWWQENRTRVYQHYNVRMVEKSASSIDNE 1082
>ref|NP_568268.1| putative protein; protein id: At5g12350.1 [Arabidopsis thaliana]
gi|14586365|emb|CAC42896.1| putative protein [Arabidopsis
thaliana]
Length = 1062
Score = 122 bits (306), Expect = 7e-27
Identities = 58/77 (75%), Positives = 66/77 (85%)
Frame = -3
Query: 751 NGSRTKDSESRNESEWVEPDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAEN 572
NG T +E+RNE EWVE DEPGVYITLT+L GG +DLKRVRFSRKRFSE QAEQWWA+N
Sbjct: 983 NGEAT--NEARNEKEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADN 1040
Query: 571 RARVYEPYHVRMIDKSS 521
R RVYE Y+VRM+DK+S
Sbjct: 1041 RGRVYEQYNVRMVDKAS 1057
>emb|CAC84088.1| ZR4 protein [Medicago sativa]
Length = 300
Score = 107 bits (267), Expect = 2e-22
Identities = 53/68 (77%), Positives = 57/68 (82%)
Frame = -3
Query: 844 SNNQSLSNGSSTVSNRHXGHTKQSQSDSNNRNGSRTKDSESRNESEWVEPDEPGVYITLT 665
SN Q LSNGSSTVS+R G KQ+QSDS NRNGSRTKDSESR+E+EWVE DE GVYITLT
Sbjct: 233 SNTQLLSNGSSTVSSRSTGQNKQNQSDSTNRNGSRTKDSESRSETEWVEQDEAGVYITLT 292
Query: 664 SLPGGVKD 641
SLPGG D
Sbjct: 293 SLPGGAID 300
>ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42140.1 [Arabidopsis
thaliana] gi|9757959|dbj|BAB08447.1| TMV resistance
protein-like [Arabidopsis thaliana]
Length = 1073
Score = 105 bits (261), Expect = 1e-21
Identities = 48/86 (55%), Positives = 65/86 (74%)
Frame = -3
Query: 775 SQSDSNNRNGSRTKDSESRNESEWVEPDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQ 596
S+ N+R+ + + + S+ E+EW+E EPGVYITL +L G +DLKRVRFSR+RF E+Q
Sbjct: 978 SEDGRNSRSSAASASNASQVEAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQ 1037
Query: 595 AEQWWAENRARVYEPYHVRMIDKSSV 518
AE WW+ENR RVYE Y++R D+SSV
Sbjct: 1038 AETWWSENRERVYEKYNIRGTDRSSV 1063
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 712,320,480
Number of Sequences: 1393205
Number of extensions: 15646848
Number of successful extensions: 59793
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 42952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54729
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
