Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001382A_C01 KMC001382A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_657494.1| SDF, Sodium:dicarboxylate symporter family [Bac... 37 0.19
ref|NP_680499.1| holin [Lactobacillus casei bacteriophage A2] gi... 33 3.7
ref|NP_702252.1| metacaspase-like protein [Plasmodium falciparum... 32 4.8
emb|CAD48190.1| NADH dehydrogenase 1 [Echinococcus granulosus] 32 6.2
ref|NP_690587.1| RNA-dependent RNA polymerase [Reston Ebola viru... 32 6.2
>ref|NP_657494.1| SDF, Sodium:dicarboxylate symporter family [Bacillus anthracis
A2012]
Length = 296
Score = 37.0 bits (84), Expect = 0.19
Identities = 29/101 (28%), Positives = 49/101 (47%), Gaps = 4/101 (3%)
Frame = -3
Query: 400 LLLGGLISYYKFTMQYLWSFWQVGLVESIFV--TAMNAICLAVG*TKEAFFGCGWNYIGL 227
++L + +YKF+ LW + E + V T+ + L TK FGC +GL
Sbjct: 108 IVLNFICKFYKFS---LWKYLAHIKEELLIVLGTSSSESVLPRMMTKMEDFGCSKPVVGL 164
Query: 226 ALDLAYSLCVMYALINISSVTVQLRAIFH--LIVGQELSML 110
+ YS + I +S T+ L +FH L +GQ+L+++
Sbjct: 165 VIPTGYSFNLDGTTIYLSMATIFLAQVFHVDLSLGQQLTII 205
>ref|NP_680499.1| holin [Lactobacillus casei bacteriophage A2]
gi|22217814|emb|CAD43908.1| holin [Lactobacillus casei
bacteriophage A2]
Length = 143
Score = 32.7 bits (73), Expect = 3.7
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 340 WQVGLVESIFVTAMNAICLAVG*TKEAFFGCGWNYIGLALDLAYSLCVMYALINISSVTV 161
W+V ++ F A+ L V T A FG W++ L +L + ++AL+ I V V
Sbjct: 5 WKVAVLSVKFWLALVPAALLVVQTAAAVFGYNWDFANLGKELTAVINAVFALLTIVGVAV 64
>ref|NP_702252.1| metacaspase-like protein [Plasmodium falciparum 3D7]
gi|23497433|gb|AAN36976.1|AE014822_11 metacaspase-like
protein [Plasmodium falciparum 3D7]
Length = 1922
Score = 32.3 bits (72), Expect = 4.8
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +2
Query: 236 VVPSTSKESFFRSSHSKTDSI-HSSDKYRFHQSNLPKRPQVLHCKFV-ITNKTPK*QTLP 409
V+P +K + ++ D HS + Y +HQ+N+P FV +TN K T
Sbjct: 479 VMPLKNKIIYINDANITNDKFKHSFENYNYHQTNIP---------FVSVTNYMNKDSTKN 529
Query: 410 MLSWSYPKAHDKQASNLLNFSN*QHEHPQNRTRTNNNI 523
+ S+S ++ + ++ N + N NNNI
Sbjct: 530 VRSFSSFDVKERISPRVIRNGNINNNKNNNINNNNNNI 567
>emb|CAD48190.1| NADH dehydrogenase 1 [Echinococcus granulosus]
Length = 147
Score = 32.0 bits (71), Expect = 6.2
Identities = 15/54 (27%), Positives = 24/54 (43%), Gaps = 4/54 (7%)
Frame = -2
Query: 392 WGSY*LLQIYNAILVVFLAGWIGGIYICHCYECYLSCCGMN----ERSFLWMWM 243
WGSY + +++ F + ++C C L CCG N S+ W W+
Sbjct: 77 WGSYNSYSLLSSVRCAFGSVSFEACFMCVVIFCALCCCGYNLIDFYYSYWWSWL 130
>ref|NP_690587.1| RNA-dependent RNA polymerase [Reston Ebola virus]
gi|22671630|gb|AAN04454.1| RNA-dependent RNA polymerase
[Reston Ebola virus]
Length = 2212
Score = 32.0 bits (71), Expect = 6.2
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -1
Query: 333 LDWWNLYLSLL*MLSVLLWDERKKLSLDVDGTTSVWPWTW-HILYVSCTL*LISALLLYS 157
L WNL+ S L LL D +K+S VD + +TW HIL LI A L
Sbjct: 1079 LQRWNLWFSYLDHCDQLLADALQKISCTVDLAQILREYTWSHILEGRS---LIGATLPCM 1135
Query: 156 LEPFSI**LGKSYQC 112
+E F + LG+ C
Sbjct: 1136 VEQFKVKWLGQYEPC 1150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,464,352
Number of Sequences: 1393205
Number of extensions: 12214657
Number of successful extensions: 42884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 41462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42845
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
