Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001381A_C01 KMC001381A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN64293.1| somatic embryogenesis receptor kinase 1 [Medicago... 37 0.15
pir||H96740 hypothetical protein F14O23.21 [imported] - Arabidop... 35 0.58
gb|AAK82463.1| At1g71830/F14O23_24 [Arabidopsis thaliana] gi|250... 35 0.58
ref|NP_177328.1| protein kinase, putative; protein id: At1g71830... 35 0.58
ref|NP_744953.1| hypothetical protein [Pseudomonas putida KT2440... 31 6.5
>gb|AAN64293.1| somatic embryogenesis receptor kinase 1 [Medicago truncatula]
gi|24935326|gb|AAN64294.1| somatic embryogenesis
receptor kinase 1 [Medicago truncatula]
Length = 627
Score = 36.6 bits (83), Expect = 0.15
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = -2
Query: 480 PRPNANWIVDSTSRIPPDELSGPR 409
P PN++WIVDST + ELSGPR
Sbjct: 604 PHPNSDWIVDSTENLHAVELSGPR 627
>pir||H96740 hypothetical protein F14O23.21 [imported] - Arabidopsis thaliana
gi|7239510|gb|AAF43236.1|AC012654_20 Contains similarity
to the somatic embryogenesis receptor-like kinase from
Daucus carota gb|AC007454; It contains 3 leucine rich
repeat domains PF|00560 and a eukaryotic protein kinase
domain PF|00069. [Arabidopsis thaliana]
Length = 601
Score = 34.7 bits (78), Expect = 0.58
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = -2
Query: 480 PRPNANWIVDSTSRIPPDELSGPR 409
P PN++WI+DST + ELSGPR
Sbjct: 578 PNPNSDWILDSTYNLHAVELSGPR 601
>gb|AAK82463.1| At1g71830/F14O23_24 [Arabidopsis thaliana]
gi|25090706|gb|AAN72307.1| At1g71830/F14O23_24
[Arabidopsis thaliana]
Length = 625
Score = 34.7 bits (78), Expect = 0.58
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = -2
Query: 480 PRPNANWIVDSTSRIPPDELSGPR 409
P PN++WI+DST + ELSGPR
Sbjct: 602 PNPNSDWILDSTYNLHAVELSGPR 625
>ref|NP_177328.1| protein kinase, putative; protein id: At1g71830.1, supported by
cDNA: gi_15081615 [Arabidopsis thaliana]
Length = 625
Score = 34.7 bits (78), Expect = 0.58
Identities = 14/24 (58%), Positives = 18/24 (74%)
Frame = -2
Query: 480 PRPNANWIVDSTSRIPPDELSGPR 409
P PN++WI+DST + ELSGPR
Sbjct: 602 PNPNSDWILDSTYNLHAVELSGPR 625
>ref|NP_744953.1| hypothetical protein [Pseudomonas putida KT2440]
gi|24984402|gb|AAN68417.1|AE016474_6 hypothetical
protein [Pseudomonas putida KT2440]
Length = 241
Score = 31.2 bits (69), Expect = 6.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 398 FNILRPFVYTFHWSIYACFFFFFFWK 321
F L P+ Y WS+Y F +F W+
Sbjct: 138 FKELLPYFYVLMWSLYTLFLVYFIWR 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,400,994
Number of Sequences: 1393205
Number of extensions: 8126845
Number of successful extensions: 15915
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15851
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
