Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001380A_C01 KMC001380A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173164.1| hypothetical protein; protein id: At1g17210.1 [... 64 1e-09
ref|NP_611474.1| CG8920-PA [Drosophila melanogaster] gi|4972722|... 33 3.5
ref|NP_611475.2| CG8920-PB [Drosophila melanogaster] gi|24656177... 33 3.5
gb|ZP_00104584.1| hypothetical protein [Prochlorococcus marinus ... 33 4.6
gb|EAA05245.1| agCP7007 [Anopheles gambiae str. PEST] 33 4.6
>ref|NP_173164.1| hypothetical protein; protein id: At1g17210.1 [Arabidopsis thaliana]
gi|25513500|pir||C86308 F20D23.9 protein - Arabidopsis
thaliana gi|5734747|gb|AAD50012.1|AC007651_7 Hypothetical
protein [Arabidopsis thaliana]
Length = 958
Score = 64.3 bits (155), Expect = 1e-09
Identities = 34/65 (52%), Positives = 45/65 (68%)
Frame = -3
Query: 659 TSSDAIALCGWQMTLDALDVLRSLGQNAIPTVQSESAASLYKQNDQQAPREKLLRNHSIS 480
+S A A+CGWQ+TLDALD +SL T++SESAASL K +D + P +KLL+ HS
Sbjct: 894 SSGFAEAVCGWQLTLDALDSFQSLENPQNQTMESESAASLCK-DDHRTPSQKLLKRHSFI 952
Query: 479 RSHGQ 465
SHG+
Sbjct: 953 SSHGK 957
>ref|NP_611474.1| CG8920-PA [Drosophila melanogaster] gi|4972722|gb|AAD34756.1|
unknown [Drosophila melanogaster]
gi|7302390|gb|AAF57478.1| CG8920-PA [Drosophila
melanogaster]
Length = 879
Score = 33.1 bits (74), Expect = 3.5
Identities = 20/63 (31%), Positives = 35/63 (54%), Gaps = 2/63 (3%)
Frame = +2
Query: 347 SLTKP--LARETLKYSQYHAYFDKYSYNQRNGEPNA*KTLKVDHDFGL*SDCVGVSHEVL 520
SL+KP +A++ +Q H + +KY Y QRN +PN + D + G + C ++ +
Sbjct: 12 SLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNH----QPDQEIGRAAKC---ENQAI 64
Query: 521 ADH 529
A+H
Sbjct: 65 AEH 67
>ref|NP_611475.2| CG8920-PB [Drosophila melanogaster] gi|24656177|ref|NP_722455.1|
CG8920-PC [Drosophila melanogaster]
gi|21626910|gb|AAF57477.2| CG8920-PB [Drosophila
melanogaster] gi|21626911|gb|AAF57476.2| CG8920-PC
[Drosophila melanogaster]
Length = 1156
Score = 33.1 bits (74), Expect = 3.5
Identities = 20/63 (31%), Positives = 35/63 (54%), Gaps = 2/63 (3%)
Frame = +2
Query: 347 SLTKP--LARETLKYSQYHAYFDKYSYNQRNGEPNA*KTLKVDHDFGL*SDCVGVSHEVL 520
SL+KP +A++ +Q H + +KY Y QRN +PN + D + G + C ++ +
Sbjct: 98 SLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNH----QPDQEIGRAAKC---ENQAI 150
Query: 521 ADH 529
A+H
Sbjct: 151 AEH 153
>gb|ZP_00104584.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 695
Score = 32.7 bits (73), Expect = 4.6
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +1
Query: 49 LKNGETSKK-FSKNLFSLPNTQRKWGQRPKVLNAIL*LKK--DISSIYNSILKPQVFE 213
+KN E+ ++ +SK L + N K+GQ + +A+L LKK D I N IL+ ++ E
Sbjct: 82 VKNSESLREIYSKFLPEIINLSNKFGQSKIIYSALLKLKKTNDFDEIKNRILEKEILE 139
>gb|EAA05245.1| agCP7007 [Anopheles gambiae str. PEST]
Length = 577
Score = 32.7 bits (73), Expect = 4.6
Identities = 24/72 (33%), Positives = 36/72 (49%), Gaps = 3/72 (4%)
Frame = -3
Query: 611 ALDVLRSLGQNAIPTVQSESAASLYKQNDQQAPREKLLRN--HSIS-RSHGQL*VFFKHL 441
A D +R+LGQ IP V SE+A +Q + Q P L N H+++ GQL + + +
Sbjct: 119 ASDYMRTLGQQNIPIVGSEAAEKRKQQLEYQVPAHDLDTNLCHNLTPYEAGQLSDYVEKI 178
Query: 440 VLHFVDYSYIYR 405
H V + R
Sbjct: 179 KTHCVGQGTVVR 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,648,613
Number of Sequences: 1393205
Number of extensions: 11251490
Number of successful extensions: 26330
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26321
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
