Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001379A_C01 KMC001379A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_444316.1| nucleolar and coiled-body phosphoprotein 1; RIK... 33 1.8
ref|NP_442482.1| unknown protein [Synechocystis sp. PCC 6803] gi... 31 7.0
sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein (MIC... 31 7.0
ref|NP_699551.1| sun protein, putative [Brucella suis 1330] gi|2... 31 7.0
ref|NP_116709.1| coatomer (COPI) complex delta subunit; Ret2p [S... 31 7.0
>ref|NP_444316.1| nucleolar and coiled-body phosphoprotein 1; RIKEN cDNA 3230402K17
gene [Mus musculus] gi|13096887|gb|AAH03244.1| Similar
to nucleolar phosphoprotein p130 [Mus musculus]
Length = 399
Score = 33.1 bits (74), Expect = 1.8
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Frame = +1
Query: 109 ESKDETSNIRLRESSSSSRTQTLSSNLLQYEKLTKGPKRNV*KPIYRQNRRVWGAQAPIQ 288
+++ + +N + SSSSS + + S + + +K PK+ V K V A AP Q
Sbjct: 213 KAQPKVANGKAAASSSSSSSSSSSDDSEEEKKAAAPPKKTVPKKQVVAKAPVKVAAAPTQ 272
Query: 289 RRLSANSN-------QKQALWKVIGA*APIEHA*APIPKPGIKQLAPRRQWSTPRRSDFA 447
+ S+ + Q+Q + K G + + P+PK AP++ + + +D +
Sbjct: 273 KSSSSEDSSSEEEEGQRQPMKKKAGPYSSVPPPSVPLPKKSPGTQAPKKAAAQTQPADSS 332
Query: 448 GKPLELPLNSSSSFFKP 498
+ +SS KP
Sbjct: 333 DDSSDDSDSSSEEEKKP 349
>ref|NP_442482.1| unknown protein [Synechocystis sp. PCC 6803] gi|7469657|pir||S76608
hypothetical protein sll0082 - Synechocystis sp. (strain
PCC 6803) gi|1001715|dbj|BAA10552.1| sll0082
[Synechocystis sp. PCC 6803]
Length = 118
Score = 31.2 bits (69), Expect = 7.0
Identities = 25/85 (29%), Positives = 35/85 (40%), Gaps = 15/85 (17%)
Frame = -2
Query: 321 LFLVGIGAQTPLNWRLSAPDSPVLPINW---------------FLDISLGTFCQFLIL** 187
L+L+ + P W+L PD P NW L ++LG C +L+L
Sbjct: 18 LYLLPVVGILPSLWQLRQPDQP----NWGDNQHHRQRRRLSRRSLQLTLGWLCLYLLL-- 71
Query: 186 VRREGLGSGA*GAFSKPYVRGFIFT 112
G G+G AF Y+ G I T
Sbjct: 72 -WGTGQGAGELAAFRLMYLNGLITT 95
>sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein (MIC LH) [Contains:
Micronuclear linker histone-alpha; Micronuclear linker
histone-beta; Micronuclear linker histone-delta;
Micronuclear linker histone-gamma]
gi|161804|gb|AAC18874.1| micronuclear linker histone
polyprotein [Tetrahymena thermophila]
Length = 633
Score = 31.2 bits (69), Expect = 7.0
Identities = 26/73 (35%), Positives = 42/73 (56%), Gaps = 4/73 (5%)
Frame = +1
Query: 22 RNES*NIQSLTKNPKKRGF*PSMAMKSIQESKDETSNIRLRESSSSSRTQT---LSSNLL 192
R+ES +S ++ P K PS M+ I++ K+E+S+ + RES S S +T S N
Sbjct: 541 RSES---KSKSEAPNK----PSNKMEVIEQPKEESSDRKRRESRSQSAKKTSDKKSKNRS 593
Query: 193 QYEKLT-KGPKRN 228
+K+T + PK+N
Sbjct: 594 DSKKMTAEDPKKN 606
>ref|NP_699551.1| sun protein, putative [Brucella suis 1330]
gi|23463705|gb|AAN33556.1|AE014535_6 sun protein,
putative [Brucella suis 1330]
Length = 429
Score = 31.2 bits (69), Expect = 7.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 385 PGIKQLAPRRQWSTPRRSDFAGKPLELPLNSSSSFFKP 498
P K++AP+ W T + D AGKP+ L S S F P
Sbjct: 378 PDFKEIAPQTLWGTVVQDDSAGKPVFL---SHGSVFSP 412
>ref|NP_116709.1| coatomer (COPI) complex delta subunit; Ret2p [Saccharomyces
cerevisiae] gi|1176026|sp|P43621|COPD_YEAST Coatomer
delta subunit (Delta-coat protein) (Delta-COP)
gi|1084763|pir||S56306 hypothetical protein YFR051c -
yeast (Saccharomyces cerevisiae)
gi|836806|dbj|BAA09290.1| YFR051C [Saccharomyces
cerevisiae]
Length = 546
Score = 31.2 bits (69), Expect = 7.0
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = -3
Query: 473 LRGSSKGFPAKSERLGVLHWR 411
LR SK FPA + LGVL WR
Sbjct: 366 LRDKSKAFPANDQSLGVLRWR 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,454,372
Number of Sequences: 1393205
Number of extensions: 9267336
Number of successful extensions: 26292
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26262
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
