Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001378A_C01 KMC001378A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04717 hypothetical protein F19F18.90 - Arabidopsis thalian... 60 1e-08
ref|NP_704008.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.2
dbj|BAA96029.1| KIAA1505 protein [Homo sapiens] 32 5.2
ref|NP_013925.1| chromosome instability and k>pir||T04717 hypothetical protein F19F18.90 - Arabidopsis thaliana
gi|4468985|emb|CAB38299.1| hypothetical protein
[Arabidopsis thaliana] gi|7270742|emb|CAB80425.1|
hypothetical protein [Arabidopsis thaliana]
Length = 87
Score = 60.5 bits (145), Expect = 1e-08
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = -2
Query: 507 EPRHTGELFKHIDKQNEVFKEVKTSMLRAELRLKVEEGVLMRKLYEVMSAHGLAK 343
EP+HT ++ KH++KQ E+ KE + +ML+ +L+VE +MRKLYE+M+ H L K
Sbjct: 2 EPQHTDDVLKHLEKQTELLKEAQKNMLQELQKLEVEHETMMRKLYELMNTHSLNK 56
>ref|NP_704008.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498746|emb|CAD50816.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1587
Score = 32.0 bits (71), Expect = 5.2
Identities = 20/43 (46%), Positives = 25/43 (57%)
Frame = +2
Query: 113 CYLYRF*WFTNFVLQKSCCRRKNRSKLYFIHCKTCLSKIYL*R 241
C+L + F NFV +K +RK SKL FI CK SK Y+ R
Sbjct: 6 CFLCNY--FVNFVKRK---KRKKGSKLRFIKCKDIESKKYIVR 43
>dbj|BAA96029.1| KIAA1505 protein [Homo sapiens]
Length = 693
Score = 32.0 bits (71), Expect = 5.2
Identities = 28/89 (31%), Positives = 42/89 (46%), Gaps = 8/89 (8%)
Frame = -2
Query: 474 IDKQNEVFKEVKTSMLRAELRLKVEEGVLMRKLYEV--------MSAHGLAKTNYNNSIT 319
+D++ V KEV+ RA L +K E + KL E+ ++ G+ N NS+
Sbjct: 54 VDEKENVIKEVEGK--RALLEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLI 111
Query: 318 SYNTGAESYDNELSGANREQ*RIFLFLHK 232
+SY +ELS RE+ R F L K
Sbjct: 112 D----KQSYHDELSRKQREKERDFRNLRK 136
>ref|NP_013925.1| chromosome instability and karyogamy; CIK1 is
important for proper organiziation of microtubule arrays
and establishment of a spindle; is essential for
karyogamy; and expression is regulated by KAR4 and
mating; Cik1p [Saccharomyces cerevisiae]
gi|399252|sp|Q01649|CIK1_YEAST SPINDLE POLE BODY
ASSOCIATED PROTEIN gi|283113|pir||A44073 CIK1 protein -
yeast (Saccharomyces cerevisiae)
gi|171222|gb|AAA34494.1| spindle pole body associated
protein gi|642291|emb|CAA87820.1| Cik1p [Saccharomyces
cerevisiae]
Length = 594
Score = 31.6 bits (70), Expect = 6.8
Identities = 18/57 (31%), Positives = 28/57 (48%)
Frame = -2
Query: 480 KHIDKQNEVFKEVKTSMLRAELRLKVEEGVLMRKLYEVMSAHGLAKTNYNNSITSYN 310
K +DK+ E+FK+VK A + L E+ L + L ++ HG K N +N
Sbjct: 242 KELDKKFEIFKKVKND---ARIELDGEQERLSKVLKDLQDTHGELKENIKTCRDEFN 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,268,438
Number of Sequences: 1393205
Number of extensions: 7905202
Number of successful extensions: 24961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24943
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
