Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001377A_C01 KMC001377A_c01
(864 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA96170.1| unnamed protein product [Oryza sativa (japonica ... 225 6e-61
ref|NP_564623.1| expressed protein; protein id: At1g53210.1, sup... 229 4e-59
gb|AAM20402.1| unknown protein [Arabidopsis thaliana] 229 4e-59
pir||G96572 protein F12M16.12 [imported] - Arabidopsis thaliana ... 229 4e-59
ref|NP_174197.1| unknown protein; protein id: At1g29020.1 [Arabi... 121 2e-26
>dbj|BAA96170.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 668
Score = 225 bits (574), Expect(2) = 6e-61
Identities = 112/150 (74%), Positives = 127/150 (84%)
Frame = -3
Query: 862 VENARWTSTKAVLLLLLGAIIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSE 683
VEN W TKAV LLLLG+ IAAAFADPLVDAV NFS A+ IP+FFISFI LPLATNSSE
Sbjct: 505 VENPGWCITKAVGLLLLGSAIAAAFADPLVDAVHNFSNASHIPSFFISFIALPLATNSSE 564
Query: 682 AVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFI 503
AVSAIIFASR K +T+SLTFSE+YG VTMNN LCL VFLAL+Y R LTWDFSSEVL+I +
Sbjct: 565 AVSAIIFASRKKLRTSSLTFSEVYGGVTMNNTLCLGVFLALIYIRNLTWDFSSEVLIILL 624
Query: 502 VCIVMGVFASFRTVFPLWTSILAILLYPFS 413
VC++MG+F SFRT FPLWT ++A +LYP S
Sbjct: 625 VCVIMGLFTSFRTTFPLWTCLVAYMLYPLS 654
Score = 32.0 bits (71), Expect(2) = 6e-61
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 432 YFSIPSPLALVYVLDYVFGWS 370
Y P L +VY+LD+VFGWS
Sbjct: 648 YMLYPLSLVVVYILDFVFGWS 668
>ref|NP_564623.1| expressed protein; protein id: At1g53210.1, supported by cDNA:
gi_13605638 [Arabidopsis thaliana]
gi|13605639|gb|AAK32813.1|AF361800_1 At1g53210/F12M16_12
[Arabidopsis thaliana] gi|22137208|gb|AAM91449.1|
At1g53210/F12M16_12 [Arabidopsis thaliana]
Length = 493
Score = 229 bits (584), Expect = 4e-59
Identities = 117/153 (76%), Positives = 131/153 (85%)
Frame = -3
Query: 862 VENARWTSTKAVLLLLLGAIIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSE 683
V + +W + KA LLLLLGA IAAAFADPLVD V+NFS AT IP+FFISFI LPLATNSSE
Sbjct: 330 VADPKWITIKAALLLLLGAAIAAAFADPLVDTVNNFSAATGIPSFFISFIALPLATNSSE 389
Query: 682 AVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFI 503
AVSAIIFASR K +TASLTFSE+ G VTMNN+LCLSVFLA+VY RGLTW+FSSEVLVI I
Sbjct: 390 AVSAIIFASRKKIRTASLTFSELCGGVTMNNILCLSVFLAIVYVRGLTWNFSSEVLVILI 449
Query: 502 VCIVMGVFASFRTVFPLWTSILAILLYPFSPGI 404
VC+VMG FASFRT +PLWT +A LLYPFS G+
Sbjct: 450 VCLVMGGFASFRTTYPLWTCFIAYLLYPFSLGL 482
>gb|AAM20402.1| unknown protein [Arabidopsis thaliana]
Length = 585
Score = 229 bits (584), Expect = 4e-59
Identities = 117/153 (76%), Positives = 131/153 (85%)
Frame = -3
Query: 862 VENARWTSTKAVLLLLLGAIIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSE 683
V + +W + KA LLLLLGA IAAAFADPLVD V+NFS AT IP+FFISFI LPLATNSSE
Sbjct: 422 VADPKWITIKAALLLLLGAAIAAAFADPLVDTVNNFSAATGIPSFFISFIALPLATNSSE 481
Query: 682 AVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFI 503
AVSAIIFASR K +TASLTFSE+ G VTMNN+LCLSVFLA+VY RGLTW+FSSEVLVI I
Sbjct: 482 AVSAIIFASRKKIRTASLTFSELCGGVTMNNILCLSVFLAIVYVRGLTWNFSSEVLVILI 541
Query: 502 VCIVMGVFASFRTVFPLWTSILAILLYPFSPGI 404
VC+VMG FASFRT +PLWT +A LLYPFS G+
Sbjct: 542 VCLVMGGFASFRTTYPLWTCFIAYLLYPFSLGL 574
>pir||G96572 protein F12M16.12 [imported] - Arabidopsis thaliana
gi|7769854|gb|AAF69532.1|AC008007_7 F12M16.12
[Arabidopsis thaliana]
Length = 574
Score = 229 bits (584), Expect = 4e-59
Identities = 117/153 (76%), Positives = 131/153 (85%)
Frame = -3
Query: 862 VENARWTSTKAVLLLLLGAIIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSE 683
V + +W + KA LLLLLGA IAAAFADPLVD V+NFS AT IP+FFISFI LPLATNSSE
Sbjct: 411 VADPKWITIKAALLLLLGAAIAAAFADPLVDTVNNFSAATGIPSFFISFIALPLATNSSE 470
Query: 682 AVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFI 503
AVSAIIFASR K +TASLTFSE+ G VTMNN+LCLSVFLA+VY RGLTW+FSSEVLVI I
Sbjct: 471 AVSAIIFASRKKIRTASLTFSELCGGVTMNNILCLSVFLAIVYVRGLTWNFSSEVLVILI 530
Query: 502 VCIVMGVFASFRTVFPLWTSILAILLYPFSPGI 404
VC+VMG FASFRT +PLWT +A LLYPFS G+
Sbjct: 531 VCLVMGGFASFRTTYPLWTCFIAYLLYPFSLGL 563
>ref|NP_174197.1| unknown protein; protein id: At1g29020.1 [Arabidopsis thaliana]
gi|10764849|gb|AAF24539.2|AC007508_2 F1K23.2 [Arabidopsis
thaliana]
Length = 1062
Score = 121 bits (303), Expect = 2e-26
Identities = 58/142 (40%), Positives = 91/142 (63%)
Frame = -3
Query: 847 WTSTKAVLLLLLGAIIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSEAVSAI 668
W + +A L ++LG ++ A P + + SE+ +P+F++ F+ +PLA N +SA
Sbjct: 897 WRTLRASLEVILGMLVVIYLARPFMMNIQLLSESAGVPSFYVVFVVIPLARNLKNTLSAH 956
Query: 667 IFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFIVCIVM 488
+DK + S TFSEIY VTMNN++ +S+ LA+VYAR L WD+++EVL+I IV +++
Sbjct: 957 FCRKKDKAKITSDTFSEIYKDVTMNNLMGISIILAIVYARELVWDYTTEVLIIVIVGLLI 1016
Query: 487 GVFASFRTVFPLWTSILAILLY 422
G+ A RT +P W +LA LY
Sbjct: 1017 GLPAYVRTTYPFWICLLAFALY 1038
Score = 99.4 bits (246), Expect = 6e-20
Identities = 48/120 (40%), Positives = 80/120 (66%)
Frame = -3
Query: 835 KAVLLLLLGAIIAAAFADPLVDAVDNFSEATTIPAFFISFIFLPLATNSSEAVSAIIFAS 656
KAV+ +++G I + A P + ++ S + +P+F++ F +PLA N A+SA
Sbjct: 424 KAVIEVIIGITIVSFLAMPFMMNIELLSVSAGVPSFYVVFAVIPLARNLKNALSAHFCRK 483
Query: 655 RDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIFIVCIVMGVFA 476
++K + S TFSEIY VT+NN+L +++ LA+VY RGLTWD+S+EVL+I IV +++ + +
Sbjct: 484 KEKAKITSDTFSEIYRDVTLNNLLGITIILAIVYIRGLTWDYSTEVLIIVIVGLIIALIS 543
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 727,108,396
Number of Sequences: 1393205
Number of extensions: 15830344
Number of successful extensions: 46454
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 43331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46295
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45988509105
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
