Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001376A_C01 KMC001376A_c01
(458 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK82549.1| AT3g54020/F5K20_320 [Arabidopsis thaliana] 74 9e-13
ref|NP_190970.1| putative protein; protein id: At3g54020.1, supp... 74 9e-13
ref|NP_565875.1| expressed protein; protein id: At2g37940.1, sup... 70 8e-12
dbj|BAB89515.1| P0414E03.11 [Oryza sativa (japonica cultivar-gro... 48 5e-05
ref|NP_671898.1| hypothetical protein; protein id: At2g29525.1 [... 39 0.033
>gb|AAK82549.1| AT3g54020/F5K20_320 [Arabidopsis thaliana]
Length = 305
Score = 73.6 bits (179), Expect = 9e-13
Identities = 40/67 (59%), Positives = 47/67 (69%)
Frame = -3
Query: 456 KLPELPDRSNAGLTLLPLSAKDIDGKIKEESHKLLNGNSAAPVDWRQRTQVNGKIMDPGN 277
KLPELPDR+ A LLP+ +KD + KEESHKLLNGN P D R R QVNGK + G+
Sbjct: 244 KLPELPDRTTA---LLPVISKD---RTKEESHKLLNGNGVDPADRRPRAQVNGKDSNGGH 297
Query: 276 TDSVTNG 256
TD+ TNG
Sbjct: 298 TDNATNG 304
>ref|NP_190970.1| putative protein; protein id: At3g54020.1, supported by cDNA:
gi_15081788 [Arabidopsis thaliana]
gi|11290578|pir||T45942 hypothetical protein F5K20.320 -
Arabidopsis thaliana gi|7630022|emb|CAB88364.1| putative
protein [Arabidopsis thaliana]
gi|22655034|gb|AAM98108.1| At3g54020/F5K20_320
[Arabidopsis thaliana]
Length = 305
Score = 73.6 bits (179), Expect = 9e-13
Identities = 40/67 (59%), Positives = 47/67 (69%)
Frame = -3
Query: 456 KLPELPDRSNAGLTLLPLSAKDIDGKIKEESHKLLNGNSAAPVDWRQRTQVNGKIMDPGN 277
KLPELPDR+ A LLP+ +KD + KEESHKLLNGN P D R R QVNGK + G+
Sbjct: 244 KLPELPDRTTA---LLPVISKD---RTKEESHKLLNGNGVDPADRRPRAQVNGKDSNGGH 297
Query: 276 TDSVTNG 256
TD+ TNG
Sbjct: 298 TDNATNG 304
>ref|NP_565875.1| expressed protein; protein id: At2g37940.1, supported by cDNA:
gi_13272424, supported by cDNA: gi_16604321, supported
by cDNA: gi_19699183 [Arabidopsis thaliana]
gi|25365904|pir||A84799 hypothetical protein At2g37940
[imported] - Arabidopsis thaliana
gi|13272425|gb|AAK17151.1|AF325083_1 unknown protein
[Arabidopsis thaliana] gi|16604322|gb|AAL24167.1|
At2g37940/T8P21.15 [Arabidopsis thaliana]
gi|19699184|gb|AAL90958.1| At2g37940/T8P21.15
[Arabidopsis thaliana]
Length = 305
Score = 70.5 bits (171), Expect = 8e-12
Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = -3
Query: 456 KLPELPDRSNAGLTLLPLSAKDIDGKIKEESHKLLNGNSAAPVDWRQRTQVNGKIMDPG- 280
KLPELPDR+ LLP+ +KD + KEE+HKLLNGN P DWR R QVNGKI G
Sbjct: 243 KLPELPDRT---AVLLPVISKD---RTKEENHKLLNGNGVDPADWRPRAQVNGKIDSNGV 296
Query: 279 NTDSVTNG 256
+TD+ NG
Sbjct: 297 HTDNTMNG 304
>dbj|BAB89515.1| P0414E03.11 [Oryza sativa (japonica cultivar-group)]
gi|20805167|dbj|BAB92836.1| P0529H11.3 [Oryza sativa
(japonica cultivar-group)]
Length = 313
Score = 47.8 bits (112), Expect = 5e-05
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 16/68 (23%)
Frame = -3
Query: 411 LPLSAKDIDG-------------KIKEESHKLLNGNSAAPVDWRQRTQVNGKIMDPGN-- 277
LP++AKD DG K+KEE HKLLNGN+ D RQR Q+NGK + N
Sbjct: 245 LPVTAKDKDGRTKEELHKLEKDCKMKEEFHKLLNGNTVDSTDRRQRVQMNGKHGEDINHT 304
Query: 276 -TDSVTNG 256
+D+ NG
Sbjct: 305 LSDATPNG 312
>ref|NP_671898.1| hypothetical protein; protein id: At2g29525.1 [Arabidopsis
thaliana]
Length = 262
Score = 38.5 bits (88), Expect = 0.033
Identities = 21/43 (48%), Positives = 28/43 (64%), Gaps = 2/43 (4%)
Frame = -3
Query: 456 KLPELPDRSN--AGLTLLPLSAKDIDGKIKEESHKLLNGNSAA 334
KLPE+ +RS+ + LLPLS KD K KE+ +LLN N+ A
Sbjct: 217 KLPEMAERSSGPSPTPLLPLSTKDSKNKSKEDHQRLLNENNVA 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,689,865
Number of Sequences: 1393205
Number of extensions: 8478166
Number of successful extensions: 19605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19601
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
