Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001375A_C01 KMC001375A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_742092.1| ORF1ab [Simian hemorrhagic fever virus] 34 1.0
ref|NP_203542.1| ORF1a [Simian hemorrhagic fever virus] gi|15383... 34 1.0
sp|P28348|NIRA_EMENI NITROGEN ASSIMILATION TRANSCRIPTION FACTOR ... 32 3.8
gb|AAN65437.1| Putative glycosyl transferase [Oryza sativa (japo... 31 8.5
>ref|NP_742092.1| ORF1ab [Simian hemorrhagic fever virus]
Length = 3595
Score = 34.3 bits (77), Expect = 1.0
Identities = 25/79 (31%), Positives = 36/79 (44%), Gaps = 10/79 (12%)
Frame = -1
Query: 285 SDCRPTTSMCPGCYFNLPL--------SPLWRFCCVLILEAIL*LLFKSGV*MPTAL--R 136
S RP+T GCYF++ + SPL+ C VL +GV P+A +
Sbjct: 902 SGARPSTPRLLGCYFSMAVAMFFLFLGSPLFILCAVL-----------AGVIAPSARYPK 950
Query: 135 ITS*CLTTAYNCTIQSDGL 79
I CL Y CT+ +D +
Sbjct: 951 ILCCCLVVVYICTLFADAI 969
>ref|NP_203542.1| ORF1a [Simian hemorrhagic fever virus] gi|15383911|gb|AAA68933.2|
ORF1a [Simian hemorrhagic fever virus]
Length = 2105
Score = 34.3 bits (77), Expect = 1.0
Identities = 25/79 (31%), Positives = 36/79 (44%), Gaps = 10/79 (12%)
Frame = -1
Query: 285 SDCRPTTSMCPGCYFNLPL--------SPLWRFCCVLILEAIL*LLFKSGV*MPTAL--R 136
S RP+T GCYF++ + SPL+ C VL +GV P+A +
Sbjct: 902 SGARPSTPRLLGCYFSMAVAMFFLFLGSPLFILCAVL-----------AGVIAPSARYPK 950
Query: 135 ITS*CLTTAYNCTIQSDGL 79
I CL Y CT+ +D +
Sbjct: 951 ILCCCLVVVYICTLFADAI 969
>sp|P28348|NIRA_EMENI NITROGEN ASSIMILATION TRANSCRIPTION FACTOR NIRA
gi|83708|pir||A41697 nitrate assimilation regulatory
protein nirA - Emericella nidulans
gi|168068|gb|AAA33317.1| NIRA protein
Length = 892
Score = 32.3 bits (72), Expect = 3.8
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +3
Query: 105 YKRL*DTKRLFSTPWAFTHPT*TITIISLPI*ERNRISITGIRED*SSSQGTY*WWACSH 284
YKR K++ + H TI +++LP R I G+R + W C+
Sbjct: 555 YKRTYGFKQICNIAVYIAHTALTIHLLNLPEKNAQRDVIHGLRHLEEMGES----WLCAR 610
Query: 285 YSIGLWSLEAT-INIQTKPECYFLFQKQHV*KIPWSSWG 398
++ + + A+ +Q E +F++ H W SWG
Sbjct: 611 RTLRILDISASKWQVQLPREAVIVFEQTHA---RWGSWG 646
>gb|AAN65437.1| Putative glycosyl transferase [Oryza sativa (japonica
cultivar-group)] gi|27436762|gb|AAO13481.1| Putative
glycosyl transferase [Oryza sativa (japonica
cultivar-group)]
Length = 480
Score = 31.2 bits (69), Expect = 8.5
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = -2
Query: 377 LSDVLFLKKKIAFWFSLNI-YRCFQTPEPNRVVTAGPPLVCALAATSIFPYPR 222
+S L L K A F + I Y CF+ P P+ + PP V LAA + + R
Sbjct: 78 ISGALTLLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASWLR 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,027,631
Number of Sequences: 1393205
Number of extensions: 10001412
Number of successful extensions: 35797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35794
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
