Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001372A_C01 KMC001372A_c01
(742 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190752.1| acyl-coA dehydrogenase; protein id: At3g51840.1... 255 4e-67
dbj|BAA96762.1| unnamed protein product [Oryza sativa (japonica ... 219 2e-56
gb|ZP_00017686.1| hypothetical protein [Chloroflexus aurantiacus] 138 7e-32
gb|AAO51878.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 134 2e-30
ref|NP_069824.1| glutaryl-CoA dehydrogenase (gcdH) [Archaeoglobu... 122 7e-27
>ref|NP_190752.1| acyl-coA dehydrogenase; protein id: At3g51840.1, supported by cDNA:
3844., supported by cDNA: gi_1657620, supported by cDNA:
gi_20453142, supported by cDNA: gi_5478794 [Arabidopsis
thaliana] gi|11252664|pir||T46895 acyl-CoA dehydrogenase
(EC 1.3.99.3) [validated] - Arabidopsis thaliana
gi|1657621|gb|AAB18129.1| G6p [Arabidopsis thaliana]
gi|3068711|gb|AAC14411.1| putative acyl-coA
dehydrogenase [Arabidopsis thaliana]
gi|5478795|dbj|BAA82478.1| Short-chain acyl CoA oxidase
[Arabidopsis thaliana] gi|20453143|gb|AAM19813.1|
At3g51840/AtG6 [Arabidopsis thaliana]
gi|21593380|gb|AAM65329.1| acyl-coA dehydrogenase
[Arabidopsis thaliana] gi|21928035|gb|AAM78046.1|
At3g51840/AtG6 [Arabidopsis thaliana]
Length = 436
Score = 255 bits (652), Expect = 4e-67
Identities = 124/142 (87%), Positives = 134/142 (94%)
Frame = -1
Query: 742 IGISMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYETGK 563
IGISMGIYDMCHRYLKERKQFGAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYETG+
Sbjct: 296 IGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQ 355
Query: 562 MTVGQASSGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINT 383
MT GQAS GK+WI+ +ARETA+LGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINT
Sbjct: 356 MTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINT 415
Query: 382 LVTGREITGFASFKPVPQRSRM 317
LVTGRE+TG ASFKP RSR+
Sbjct: 416 LVTGREVTGIASFKPA-TRSRL 436
>dbj|BAA96762.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9757682|dbj|BAB08201.1| ESTs
AU056822(S20908),C26441(C12328), C28477(C61243)
correspond to a region of the predicted gene.~Similar to
Arabidopsis thaliana putative acyl-coA dehydrogenase
(AF049236) [Oryza sativa (japonica cultivar-group)]
Length = 428
Score = 219 bits (559), Expect = 2e-56
Identities = 106/135 (78%), Positives = 118/135 (86%)
Frame = -1
Query: 742 IGISMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYETGK 563
IGISMG++D+CHR KQFG PL AFQ+NQ+KLV+MLGNIQAM+LVGWRLCKLYE+GK
Sbjct: 291 IGISMGVFDVCHR-----KQFGVPLVAFQLNQEKLVRMLGNIQAMLLVGWRLCKLYESGK 345
Query: 562 MTVGQASSGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINT 383
MT G AS GK W + ARE +LGRELLGGNGILADFLVAKAFCDLEPIY+YEGTYDIN+
Sbjct: 346 MTPGHASLGKGWTSRMAREVVSLGRELLGGNGILADFLVAKAFCDLEPIYSYEGTYDINS 405
Query: 382 LVTGREITGFASFKP 338
LVTGREITG ASFKP
Sbjct: 406 LVTGREITGIASFKP 420
>gb|ZP_00017686.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 210
Score = 138 bits (348), Expect = 7e-32
Identities = 69/135 (51%), Positives = 94/135 (69%), Gaps = 2/135 (1%)
Frame = -1
Query: 742 IGISMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYET-- 569
+G + Y++ Y +R+QFG P+A FQ+ QQKLV MLG++ A+ L+ WRL KL +
Sbjct: 75 VGHAQAAYELALEYTLQREQFGRPIAGFQLVQQKLVHMLGDLTAIQLMAWRLSKLRDEDE 134
Query: 568 GKMTVGQASSGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDI 389
++T G AS K + +AR+ ALGRE+LGGNGIL D +A+ F D+E +YTYEGT +I
Sbjct: 135 SQITEGMASLAKQYCAAKARQIVALGREVLGGNGILLDRHIARHFADIEAVYTYEGTNEI 194
Query: 388 NTLVTGREITGFASF 344
NTLV GREITG A+F
Sbjct: 195 NTLVVGREITGIAAF 209
>gb|AAO51878.1| similar to Arabidopsis thaliana (Mouse-ear cress). Putative
acyl-CoA dehydrogenase G6P (ATG6) (At3g51840/AtG6)
(Acyl-CoA dehydrogenase) [Dictyostelium discoideum]
Length = 430
Score = 134 bits (336), Expect = 2e-30
Identities = 63/136 (46%), Positives = 96/136 (70%)
Frame = -1
Query: 742 IGISMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYETGK 563
+G++ Y+ C +Y+K+R QFG PLA FQ+ Q++LV+M NIQA+ L+ R+ +L++ GK
Sbjct: 286 LGVASNAYEKCLQYVKQRNQFGQPLAQFQLVQERLVKMCSNIQAISLMCHRVSQLFDQGK 345
Query: 562 MTVGQASSGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINT 383
++ GQ K++ T +ARE ++ REL GGNGIL D + + F D+E IYT+EGTYD+NT
Sbjct: 346 LSSGQVGLLKAFSTSKAREVVSMARELFGGNGILLDD-IGRNFLDMEGIYTFEGTYDVNT 404
Query: 382 LVTGREITGFASFKPV 335
L+ REITG ++ +
Sbjct: 405 LIAAREITGLSAISSI 420
>ref|NP_069824.1| glutaryl-CoA dehydrogenase (gcdH) [Archaeoglobus fulgidus]
gi|7431729|pir||G69373 glutaryl-CoA dehydrogenase (gcdH)
homolog - Archaeoglobus fulgidus
gi|2649607|gb|AAB90252.1| glutaryl-CoA dehydrogenase
(gcdH) [Archaeoglobus fulgidus DSM 4304]
Length = 395
Score = 122 bits (305), Expect = 7e-27
Identities = 65/134 (48%), Positives = 83/134 (61%)
Frame = -1
Query: 742 IGISMGIYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYETGK 563
IG +M Y+ Y KERKQFGAPLA++Q+ Q+KLV ML I L+ WRL KL + GK
Sbjct: 258 IGAAMDCYETALNYTKERKQFGAPLASYQLVQEKLVNMLIEITKGQLLAWRLAKLMDEGK 317
Query: 562 MTVGQASSGKSWITLRARETAALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINT 383
T Q S K AR A RELLG NGI D+ + ++E +YTYEGT DI+T
Sbjct: 318 ATTEQISMAKKNNVRVARYCARTARELLGANGISLDYSPIRHMANIESVYTYEGTDDIHT 377
Query: 382 LVTGREITGFASFK 341
L+ GR ITG+ +F+
Sbjct: 378 LILGRAITGYQAFR 391
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,655,158
Number of Sequences: 1393205
Number of extensions: 12856643
Number of successful extensions: 29861
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 28861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29734
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
