Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001370A_C01 KMC001370A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63450.1| E2, ubiquitin-conjugating enzyme 10 (UBC10) [Arab... 228 6e-59
ref|NP_568788.1| E2, ubiquitin-conjugating enzyme 10 (UBC10); pr... 226 2e-58
sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 9 (U... 225 3e-58
ref|NP_567791.1| E2, ubiquitin-conjugating enzyme 9 (UBC9); prot... 225 3e-58
gb|AAG40371.1|AF325019_1 AT4g27960 [Arabidopsis thaliana] 225 3e-58
>gb|AAM63450.1| E2, ubiquitin-conjugating enzyme 10 (UBC10) [Arabidopsis thaliana]
Length = 148
Score = 228 bits (580), Expect = 6e-59
Identities = 107/114 (93%), Positives = 109/114 (94%)
Frame = -3
Query: 623 ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 444
ATIMGP +SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 35 ATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 94
Query: 443 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTPEICHG 282
PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+NKYESTARSWT E G
Sbjct: 95 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQEYAMG 148
>ref|NP_568788.1| E2, ubiquitin-conjugating enzyme 10 (UBC10); protein id:
At5g53300.1, supported by cDNA: 25162., supported by
cDNA: gi_11908049, supported by cDNA: gi_13265586,
supported by cDNA: gi_13358197, supported by cDNA:
gi_14517461, supported by cDNA: gi_18086479, supported
by cDNA: gi_21280892, supported by cDNA: gi_349212
[Arabidopsis thaliana] gi|464987|sp|P35133|UBCA_ARATH
Ubiquitin-conjugating enzyme E2-17 kDa 10/12
(Ubiquitin-protein ligase 10/12) (Ubiquitin carrier
protein 10/12) gi|421858|pir||S32672 ubiquitin-protein
ligase (EC 6.3.2.19) UBC10 - Arabidopsis thaliana
gi|297878|emb|CAA78715.1| ubiquitin conjugating enzyme
[Arabidopsis thaliana] gi|349213|gb|AAA32895.1|
ubiquitin conjugating enzyme gi|9759177|dbj|BAB09792.1|
ubiquitin-conjugating enzyme E2-17 kD 10
(ubiquitin-protein ligase 10) (ubiquitin carrier protein
10) [Arabidopsis thaliana]
gi|11692932|gb|AAG40069.1|AF324718_1 AT5g53300
[Arabidopsis thaliana]
gi|11762158|gb|AAG40357.1|AF325005_1 AT5g53300
[Arabidopsis thaliana]
gi|11908050|gb|AAG41454.1|AF326872_1 putative E2,
ubiquitin-conjugating enzyme UBC10 [Arabidopsis
thaliana] gi|14517462|gb|AAK62621.1| AT5g53300/K19E1_10
[Arabidopsis thaliana] gi|18086480|gb|AAL57693.1|
AT5g53300/K19E1_10 [Arabidopsis thaliana]
gi|21280893|gb|AAM44985.1| putative E2,
ubiquitin-conjugating enzyme UBC10 [Arabidopsis
thaliana] gi|22136576|gb|AAM91074.1| AT5g53300/K19E1_10
[Arabidopsis thaliana]
Length = 148
Score = 226 bits (576), Expect = 2e-58
Identities = 106/114 (92%), Positives = 109/114 (94%)
Frame = -3
Query: 623 ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 444
ATIMGP +SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 35 ATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 94
Query: 443 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTPEICHG 282
PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+NKYESTARSWT + G
Sbjct: 95 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148
>sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 9 (Ubiquitin-protein ligase
9) (Ubiquitin carrier protein 9) (UBCAT4B)
gi|421857|pir||S32674 ubiquitin-protein ligase (EC
6.3.2.19) UBC9 - Arabidopsis thaliana
gi|297884|emb|CAA78714.1| ubiquitin conjugating enzyme
homolog [Arabidopsis thaliana] gi|349211|gb|AAA32894.1|
ubiquitin conjugating enzyme gi|600391|emb|CAA51201.1|
ubiquitin conjugating enzyme E2 [Arabidopsis thaliana]
gi|4455355|emb|CAB36765.1| ubiquitin-protein ligase UBC9
[Arabidopsis thaliana] gi|7269650|emb|CAB79598.1|
ubiquitin-protein ligase UBC9 [Arabidopsis thaliana]
gi|23297139|gb|AAN13102.1| E2 ubiquitin-conjugating
enzyme 9 (UBC9) [Arabidopsis thaliana]
Length = 148
Score = 225 bits (574), Expect = 3e-58
Identities = 105/114 (92%), Positives = 109/114 (95%)
Frame = -3
Query: 623 ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 444
ATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 35 ATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 94
Query: 443 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTPEICHG 282
PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+NKYESTAR+WT + G
Sbjct: 95 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148
>ref|NP_567791.1| E2, ubiquitin-conjugating enzyme 9 (UBC9); protein id: At4g27960.1,
supported by cDNA: gi_13358210 [Arabidopsis thaliana]
Length = 178
Score = 225 bits (574), Expect = 3e-58
Identities = 105/114 (92%), Positives = 109/114 (95%)
Frame = -3
Query: 623 ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 444
ATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 65 ATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 124
Query: 443 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTPEICHG 282
PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+NKYESTAR+WT + G
Sbjct: 125 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 178
>gb|AAG40371.1|AF325019_1 AT4g27960 [Arabidopsis thaliana]
Length = 178
Score = 225 bits (574), Expect = 3e-58
Identities = 105/114 (92%), Positives = 109/114 (95%)
Frame = -3
Query: 623 ATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 444
ATIMGP DSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS
Sbjct: 65 ATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWS 124
Query: 443 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTPEICHG 282
PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+NKYESTAR+WT + G
Sbjct: 125 PALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,527,247
Number of Sequences: 1393205
Number of extensions: 13914962
Number of successful extensions: 32668
Number of sequences better than 10.0: 719
Number of HSP's better than 10.0 without gapping: 31196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32332
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
